U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Ovis_aries_1.0

Organism name:
Ovis aries (sheep)
Infraspecific name:
Breed: mixed
Sex:
female
BioSample:
SAMN03004385
BioProject:
PRJNA33937
Submitter:
International Sheep Genomics Consortium
Date:
2010/02/25
Synonyms:
oviAri1
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • genome length too small
GenBank assembly accession:
GCA_000005525.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
ACIV01
Genome coverage:
3x
Sequencing technology:
454 FLX

IDs: 6408 [UID] 6408 [GenBank]

See Genome Information for Ovis aries

There are 58 assemblies for this organism

See more

History (Show revision history)

Comment

This is a guided assembly of the sheep genome, using the bovine genome as the initial guide, as described at http://www.sheephapmap.org/genseq.php. Six females of different breeds were sequenced at 0.5x coverage by 454 FLX, the reads were aligned to ... the bovine genome and pooled and assembled into melded contigs in 1Mb bins, defined using the bovine genome assembly. These contigs were then ordered into ovine chromosomes, using BES and an updated virtual sheep genome built on the bovine genome framework (Dalrymple et al. Genome Biology 2007. 8:R152). The melded contigs are the 2,351,563 pieces of the first version of this WGS project, ACIV010000000.  more

Global statistics

Total sequence length2,860,496,367
Total ungapped length1,201,919,081
Gaps between scaffolds139
Number of scaffolds1,331
Scaffold N5034,092,587
Scaffold L5026
Number of contigs2,352,347
Contig N50685
Contig L50545,914
Total number of chromosomes and plasmids27
Number of component sequences (WGS or clone)2,351,563

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000005535.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000885.1n/an/a0
Chromosome 2CM000886.1n/an/a0
Chromosome 3CM000887.1n/an/a0
Chromosome 4CM000888.1n/an/a0
Chromosome 5CM000889.1n/an/a0
Chromosome 6CM000890.1n/an/a0
Chromosome 7CM000891.1n/an/a0
Chromosome 8CM000892.1n/an/a0
Chromosome 9CM000893.1n/an/a0
Chromosome 10CM000894.1n/an/a0
Chromosome 11CM000895.1n/an/a0
Chromosome 12CM000896.1n/an/a0
Chromosome 13CM000897.1n/an/a0
Chromosome 14CM000898.1n/an/a0
Chromosome 15CM000899.1n/an/a0
Chromosome 16CM000900.1n/an/a0
Chromosome 17CM000901.1n/an/a0
Chromosome 18CM000902.1n/an/a0
Chromosome 19CM000903.1n/an/a0
Chromosome 20CM000904.1n/an/a0
Chromosome 21CM000905.1n/an/a0
Chromosome 22CM000906.1n/an/a0
Chromosome 23CM000907.1n/an/a0
Chromosome 24CM000908.1n/an/a0
Chromosome 25CM000909.1n/an/a0
Chromosome 26CM000910.1n/an/a0
Chromosome XCM000911.1n/an/a0
unplacedn/an/an/a1,190

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,860,496,3671,3311,201,919,08134,092,5872,352,120139
Chromosome 1299,839,92714124,935,24825,582,709242,34113
Chromosome 2263,237,07817113,816,55422,513,779218,90217
Chromosome 3242,887,9187105,701,59069,329,666206,4217
Chromosome 4128,104,666155,692,064128,091,003106,7621
Chromosome 5117,185,640350,015,62347,999,69496,3883
Chromosome 6129,067,040651,907,33935,309,913101,8606
Chromosome 7108,950,689348,031,47840,916,23391,4603
Chromosome 897,955,513443,277,03422,176,25082,5004
Chromosome 9100,831,284643,855,22824,032,52686,5116
Chromosome 1094,216,033538,615,65151,314,84776,3125
Chromosome 1167,137,890730,666,59113,132,21460,1137
Chromosome 1286,457,535336,629,17859,744,93371,8933
Chromosome 1389,095,295641,135,54631,841,73580,4586
Chromosome 1469,342,551630,298,82114,325,32659,7836
Chromosome 1590,133,444835,348,84111,887,15169,9278
Chromosome 1677,187,635333,133,90951,930,96465,7182
Chromosome 1778,643,424833,503,92613,496,28766,6168
Chromosome 1872,490,392530,633,15020,366,62361,2295
Chromosome 1964,988,650130,132,50764,986,78058,0511
Chromosome 2055,885,198324,730,13244,088,53148,4193
Chromosome 2155,550,361222,517,28046,825,85345,5292
Chromosome 2255,886,266223,108,65753,010,47645,1452
Chromosome 2366,770,968330,214,32255,243,35959,1753
Chromosome 2445,319,161620,316,91827,265,71842,0966
Chromosome 2548,346,598420,780,04917,382,46140,6174
Chromosome 2650,101,229421,537,42026,483,55242,0354
Chromosome X129,136,099444,732,58044,098,13189,1694
unplaced75,747,8831,19016,651,44574,93036,6900