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dmoj_caf1

Organism name:
Drosophila mojavensis (flies)
Infraspecific name:
Strain: TSC#15081-1352.22
BioSample:
SAMN02953651
BioProject:
PRJNA12682
Submitter:
Agencourt Bioscience Corporation
Date:
2006/06/30
Synonyms:
droMoj3
Release type:
Minor
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000005175.1 (latest)
RefSeq assembly accession:
GCF_000005175.2 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AAPU01
Genome coverage:
8.2x

IDs: 279158 [UID] 279138 [GenBank] 279158 [RefSeq]

See Genome Information for Drosophila mojavensis

There are 2 assemblies for this organism

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History (Show revision history)

Comment

This is the CAF1 assembly of the Drosophila mojavensis genome. It has 8.2x coverage.
Annotation was updated in November 2015

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::FlyBase
Annotation Status::Full annotation
Annotation Version::Release 1.04
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
URL::http://flybase.org
##Genome-Annotation-Data-END##

Global statistics

Total sequence length193,826,310
Total ungapped length180,207,831
Gaps between scaffolds0
Number of scaffolds6,841
Scaffold N5024,764,193
Scaffold L504
Number of contigs11,874
Contig N50121,517
Contig L50358
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)11,884

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced193,826,3106,841180,207,83124,764,1935,0330