Format

Download Assemblies

Send to:

Choose Destination

Btau_5.0.1

Organism name:
Bos taurus (cattle)
Infraspecific name:
Breed: Hereford
Sex:
pooled male and female
BioSample:
SAMN02898106
BioProject:
PRJNA12555
Submitter:
Cattle Genome Sequencing International Consortium
Date:
2015/11/19
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000003205.6 (latest)
RefSeq assembly accession:
GCF_000003205.7 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AAFC05
Assembly method:
UMD Overlapper v. 2009; additional processing + PBJelly2 v. 14.9.9
Genome coverage:
19.0x
Sequencing technology:
Sanger; PacBio RS II

IDs: 585021 [UID] 2689988 [GenBank] 2701278 [RefSeq]

See Genome Information for Bos taurus

There are 3 assemblies for this organism

See more

History (Show revision history)

Global statistics

Total sequence length2,724,980,740
Total ungapped length2,713,032,866
Gaps between scaffolds2,856
Number of scaffolds5,998
Scaffold N506,806,220
Scaffold L50104
Number of contigs42,267
Contig N50276,285
Contig L502,849
Total number of chromosomes and plasmids31
Number of component sequences (WGS or clone)42,574

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000000095.6)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000177.6=NC_007299.60
Chromosome 2CM000178.7=NC_007300.60
Chromosome 3CM000179.6=NC_007301.60
Chromosome 4CM000180.6=NC_007302.60
Chromosome 5CM000181.7=NC_007303.60
Chromosome 6CM000182.7=NC_007304.60
Chromosome 7CM000183.7=NC_007305.60
Chromosome 8CM000184.6=NC_007306.60
Chromosome 9CM000185.7=NC_007307.60
Chromosome 10CM000186.6=NC_007308.60
Chromosome 11CM000187.6=NC_007309.60
Chromosome 12CM000188.7=NC_007310.60
Chromosome 13CM000189.7=NC_007311.60
Chromosome 14CM000190.6=NC_007312.60
Chromosome 15CM000191.7=NC_007313.60
Chromosome 16CM000192.5=NC_007314.50
Chromosome 17CM000193.6=NC_007315.60
Chromosome 18CM000194.7=NC_007316.60
Chromosome 19CM000195.6=NC_007317.60
Chromosome 20CM000196.6=NC_007318.60
Chromosome 21CM000197.6=NC_007319.60
Chromosome 22CM000198.6=NC_007320.60
Chromosome 23CM000199.8=NC_007324.60
Chromosome 24CM000200.7=NC_007325.60
Chromosome 25CM000201.6=NC_007326.60
Chromosome 26CM000202.7=NC_007327.60
Chromosome 27CM000203.6=NC_007328.50
Chromosome 28CM000204.6=NC_007329.60
Chromosome 29CM000205.6=NC_007330.60
Chromosome XCM000206.6=NC_007331.50
Chromosome YCM001061.2=NC_016145.10
unplacedn/an/an/a3,112

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,724,980,7405,9982,713,032,8666,806,22036,2692,856
Chromosome 1158,972,87693158,695,0257,156,1221,70192
Chromosome 2137,479,42557137,248,86012,146,3451,28156
Chromosome 3121,888,05760121,684,12111,414,0961,23159
Chromosome 4121,284,77272121,066,6575,799,0181,32271
Chromosome 5121,584,146113121,343,0794,968,9091,334112
Chromosome 6119,927,886124119,589,8155,011,3172,039123
Chromosome 7113,155,487186111,887,4453,094,2681,207185
Chromosome 8114,055,384288113,806,0922,257,3121,427287
Chromosome 9106,206,484376105,986,6481,310,9951,132375
Chromosome 10104,654,53844104,450,39414,233,4011,25443
Chromosome 11107,582,16749107,405,56317,955,5301,01848
Chromosome 1291,593,65517891,359,4357,019,9831,162177
Chromosome 1384,590,9973184,430,44916,386,4211,02430
Chromosome 1485,007,1208784,754,76714,754,0641,74686
Chromosome 1585,681,1366185,322,7828,221,77697660
Chromosome 1682,000,0273581,803,50212,767,5451,04734
Chromosome 1775,367,1544975,210,5358,802,90685248
Chromosome 1866,346,7855166,155,7958,231,1411,15550
Chromosome 1964,325,5104364,170,8604,842,06995042
Chromosome 2072,301,4493972,189,5985,729,19769538
Chromosome 2171,883,0912971,727,29110,915,95499728
Chromosome 2261,679,4302061,586,46917,175,87251719
Chromosome 2352,684,9116752,584,8889,227,63253166
Chromosome 2462,911,1031562,806,31024,978,40161214
Chromosome 2543,100,4251943,011,68212,083,13262918
Chromosome 2651,889,1112251,794,1197,692,61160421
Chromosome 2745,695,6905645,457,3274,534,90984255
Chromosome 2846,481,2782446,400,4098,381,50747723
Chromosome 2951,869,4684851,707,3054,488,81775747
Chromosome X150,266,161538149,460,7273,503,8355,745537
Chromosome Y43,300,1811238,720,08110,947,484512
unplaced9,214,8363,1129,214,8365,67700
Support Center