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catChrV17e

Organism name:
Felis catus (domestic cat)
Infraspecific name:
Breed: mixed
BioSample:
SAMN03000705
Submitter:
NHGRI/Genome Technology Branch
Date:
2009/03/16
Synonyms:
felCat4
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000003115.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
ACBE01

IDs: 3328 [UID] 3328 [GenBank]

See Genome Information for Felis catus

There are 2 assemblies for this organism

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History (Show revision history)

Comment

This assembly adds 0.9X coverage to the 1.9X coverage of the previous cat assembly (WGS project AANG00000000 of the Abyssinian cat "Cinnamon"). The 0.9X coverage comes from six other breeds and one wild cat from paired-end fosmid ABI 3730 ... reads. The entire 2.8X coverage was assembled and mapped to the cat genome as described in Pontius et al. (2007). Genome Res: 17, 1675-1689 (PubMed ID 17975172). This assembly was a necessary step towards the primary goal of discovering SNPs.
Scaffolds GG658199-GG661873 are the components of the chromosomes, CM000695-CM000713, and unplaced multi-component scaffolds.
Assembly name: catChrV17e
Genome coverage: 2.8x
Sequencing technology: ABI  more

Global statistics

Total sequence length3,160,286,939
Total assembly gap length1,169,667,819
Gaps between scaffolds381
Number of scaffolds104,434
Scaffold N5016,304,361
Scaffold L5047
Number of contigs604,920
Contig N504,577
Contig L50122,526
Total number of chromosomes and plasmids19

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000001445.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome A1CM000695.1n/an/a0
Chromosome A2CM000696.1n/an/a0
Chromosome A3CM000697.1n/an/a0
Chromosome B1CM000698.1n/an/a0
Chromosome B2CM000699.1n/an/a0
Chromosome B3CM000700.1n/an/a0
Chromosome B4CM000701.1n/an/a0
Chromosome C1CM000702.1n/an/a0
Chromosome C2CM000703.1n/an/a0
Chromosome D1CM000704.1n/an/a0
Chromosome D2CM000705.1n/an/a0
Chromosome D3CM000706.1n/an/a0
Chromosome D4CM000707.1n/an/a0
Chromosome E1CM000708.1n/an/a0
Chromosome E2CM000709.1n/an/a0
Chromosome E3CM000710.1n/an/a0
Chromosome F1CM000711.1n/an/a0
Chromosome F2CM000712.1n/an/a0
Chromosome XCM000713.1n/an/a0
unplacedn/an/an/a104,034

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome A1279,330,93619162,575,31461,857,13350,53618
Chromosome A2217,619,04616121,293,91620,213,03734,38515
Chromosome A3170,549,64420110,346,55313,515,98729,46619
Chromosome B1216,457,95422130,679,60316,866,12043,00621
Chromosome B2168,089,9779101,890,95929,220,77830,9688
Chromosome B3156,492,22317100,933,88726,673,71528,21516
Chromosome B4164,876,58630106,560,41717,718,71031,38029
Chromosome C1231,559,38722160,989,37115,110,50847,48621
Chromosome C2168,445,08315107,655,01818,446,81434,06514
Chromosome D1146,492,5611781,499,19414,287,37822,61416
Chromosome D2111,518,8941265,347,20321,529,74916,80011
Chromosome D3124,755,2542873,696,33123,265,37620,07427
Chromosome D4114,530,972768,581,20216,458,92819,1706
Chromosome E1134,939,2441143,224,2779,054,27010,75510
Chromosome E276,081,0381550,918,10511,128,77412,79514
Chromosome E371,076,8061034,836,4119,088,9697,9569
Chromosome F192,851,3831244,407,28532,039,11012,36211
Chromosome F281,418,843356,959,65936,768,94217,5042
Chromosome X145,558,87611584,278,88911,150,69426,943114
unplaced287,642,232104,034283,945,5263,6124,0060
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