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ASM225v1

  • Record removed. This version of the assembly has been suppressed.
Organism name:
Macaca mulatta (Rhesus monkey)
Isolate:
17573
Sex:
female
BioSample:
SAMN02981228
Submitter:
Macaca mulatta Genome Sequencing Consortium
Date:
2006/02/27
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000002255.1 (suppressed)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AANU01

IDs: 355881 [UID] 280838 [GenBank]

See Genome Information for Macaca mulatta

There are 6 assemblies for this organism

See more

History (Show revision history)

Comment

The members of the Macaca mulatta Genome Sequencing Consortium are the Baylor College of Medicine Human Genome Sequencing Center, the Genome Sequencing Center at Washington University in St. Louis and the J. Craig Venter Institute Joint Technology Center.
The rhesus ... monkey that provided DNA for the project is ID 17573, a female from the Southwest National Primate Research Center at the Southwest Foundation for Biomedical Research in San Antonio, TX who was born Dec. 21, 1990 in San Antonio and died Jan. 25, 2002. All animals in that branch of the colony are derived from Indian origin rhesus brought to the US many years ago. This animal is not likely to be closely related to the Indian origin animal that provided DNA for the BAC library.
In June 2015 seven singleton scaffolds, KQ085875-KQ085881, were created because the scaffold length is shorter than the component length, meaning that these scaffolds are not identical to their components.  more

Global statistics

Total sequence length3,097,570,770
Total assembly gap length226,387,669
Gaps between scaffolds0
Number of scaffolds122,163
Scaffold N50147,794,981
Scaffold L509
Number of contigs301,039
Contig N5025,707
Contig L5032,114
Total number of chromosomes and plasmids21

Supplemental Content

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000000115.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000308.1=NC_007858.177
Chromosome 2CM000288.1=NC_007859.167
Chromosome 3CM000289.1=NC_007860.191
Chromosome 4CM000290.1=NC_007861.1100
Chromosome 5CM000291.1=NC_007862.159
Chromosome 6CM000292.1=NC_007863.158
Chromosome 7CM000293.1=NC_007864.159
Chromosome 8CM000294.1=NC_007865.138
Chromosome 9CM000295.1=NC_007866.159
Chromosome 10CM000296.1=NC_007867.152
Chromosome 11CM000297.1=NC_007868.153
Chromosome 12CM000298.1=NC_007869.122
Chromosome 13CM000299.1=NC_007870.145
Chromosome 14CM000300.1=NC_007871.156
Chromosome 15CM000301.1=NC_007872.149
Chromosome 16CM000302.1=NC_007873.156
Chromosome 17CM000303.1=NC_007874.158
Chromosome 18CM000304.1=NC_007875.120
Chromosome 19CM000305.1=NC_007876.1101
Chromosome 20CM000306.1=NC_007877.154
Chromosome XCM000307.1=NC_007878.138
unplacedn/an/an/a120,930

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1AllAssembled moleculeUnlocalized scaffolds230,367,966228,252,2152,115,75178177215,383,771213,446,4201,937,351228,252,215228,252,21543,83214,97014,757213000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds191,978,389189,746,6362,231,75368167183,507,835181,477,2832,030,552189,746,636189,746,63668,01410,61110,410201000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds199,818,171196,418,9893,399,18292191177,213,452174,221,7172,991,735196,418,989196,418,98983,06711,74011,442298000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds170,778,796167,655,6963,123,1001011100162,817,484160,215,1172,602,367167,655,696167,655,69673,9659,9029,605297000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds183,772,946182,086,9691,685,97760159176,378,051174,874,2531,503,798182,086,969182,086,96959,4209,8539,721132000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds179,355,685178,205,2211,150,46459158171,405,970170,378,0981,027,872178,205,221178,205,22160,4379,9779,871106000
Chromosome 7AllAssembled moleculeUnlocalized scaffolds171,945,244169,801,3662,143,87860159160,457,046158,593,5061,863,540169,801,366169,801,36695,08410,81310,591222000
Chromosome 8AllAssembled moleculeUnlocalized scaffolds148,422,694147,794,981627,71339138137,595,192137,021,754573,438147,794,981147,794,98132,6428,0137,95063000
Chromosome 9AllAssembled moleculeUnlocalized scaffolds135,283,679133,323,8591,959,82060159124,724,117123,067,8711,656,246133,323,859133,323,85974,7017,9307,783147000
Chromosome 10AllAssembled moleculeUnlocalized scaffolds97,271,20794,855,7582,415,4495315288,889,22886,818,7442,070,48494,855,75894,855,758247,0737,3087,103205000
Chromosome 11AllAssembled moleculeUnlocalized scaffolds137,611,650134,511,8953,099,75554153130,637,424127,686,3572,951,067134,511,895134,511,895725,7528,9558,710245000
Chromosome 12AllAssembled moleculeUnlocalized scaffolds107,335,250106,505,843829,40723122102,132,406101,395,563736,843106,505,843106,505,84367,4295,7355,67560000
Chromosome 13AllAssembled moleculeUnlocalized scaffolds139,498,962138,028,9431,470,01946145126,560,595125,241,7211,318,874138,028,943138,028,94356,3387,8317,724107000
Chromosome 14AllAssembled moleculeUnlocalized scaffolds134,024,537133,002,5721,021,96557156121,110,026120,216,370893,656133,002,572133,002,57236,8107,7407,65288000
Chromosome 15AllAssembled moleculeUnlocalized scaffolds110,914,775110,119,387795,38850149104,875,484104,145,691729,793110,119,387110,119,38739,5066,9116,84071000
Chromosome 16AllAssembled moleculeUnlocalized scaffolds80,252,08978,773,4321,478,6575715671,703,58170,457,7851,245,79678,773,43278,773,43268,1376,8546,711143000
Chromosome 17AllAssembled moleculeUnlocalized scaffolds95,480,79794,452,5691,028,2285915890,070,61789,218,270852,34794,452,56994,452,56934,7775,1875,078109000
Chromosome 18AllAssembled moleculeUnlocalized scaffolds73,936,93873,567,989368,9492112070,060,08669,717,142342,94473,567,98973,567,98938,4013,9433,91330000
Chromosome 19AllAssembled moleculeUnlocalized scaffolds66,625,51964,391,5912,233,928102110149,133,13547,238,8851,894,25064,391,59164,391,59158,1356,5326,264268000
Chromosome 20AllAssembled moleculeUnlocalized scaffolds88,937,56188,221,753715,8085515469,940,01969,329,831610,18888,221,75388,221,75320,8445,8355,75184000
Chromosome XAllAssembled moleculeUnlocalized scaffolds155,425,217153,947,5211,477,69639138142,859,718141,500,8451,358,873153,947,521153,947,52190,8568,8988,780118000
unplacedAssembled molecule198,532,698120,930193,727,8641,5023,3380
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