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Spur_2.6

Organism name:
Strongylocentrotus purpuratus (purple sea urchin)
Sex:
male
BioProject:
PRJNA10736
Submitter:
Baylor College of Medicine
Date:
2010/10/21
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000002235.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AAGJ03
Genome coverage:
18x in SOLiD; 2x Sanger data from BACs; 6x Sanger data from WGS
Sequencing technology:
SOLiD; Sanger

IDs: 200568 [UID] 200568 [GenBank]

See Genome Information for Strongylocentrotus purpuratus

History (Show revision history)

Comment

Contact ncbi-contacts@bcm.tmc.edu for more information.
The assembled contigs from the previous version of the assembly were superscaffolded using the Atlas-Link software (unpublished) with SOLiD sequence data to order and orient scaffolds and to fill gaps within scaffolds.

Global statistics

Total sequence length912,546,440
Total ungapped length806,127,621
Gaps between scaffolds0
Number of scaffolds75,034
Scaffold N50167,967
Scaffold L501,259
Number of contigs190,568
Contig N5011,612
Contig L5017,368
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)196,827

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced912,546,44075,034806,127,621167,967115,5350
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