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Amel_4.5

Organism name:

Apis mellifera (honey bee)

Infraspecific name:

Strain: DH4

BioSample:

SAMN00002455

BioProject:

PRJNA10625

Submitter:

Human Genome Sequencing Center

Date:

2011/01/14

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000002195.1 (latest)

RefSeq assembly accession:

GCF_000002195.4 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)

Data displayed for GenBank version

WGS Project:

AADG06

Assembly method:

Atlas assembly system v. before 2011

Genome coverage:

Sequencing technology:

Sanger; SOLiD; 454

IDs: 254398 [UID] 239898 [GenBank] 254398 [RefSeq]

See Genome Information for Apis mellifera

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000002195.1	≠	GCF_000002195.4	Amel_4.5	Chromosome	Latest GenBank, RefSeq suppressed
n/a	n/a	GCF_000002195.3	Amel_4.0	Chromosome	RefSeq suppressed
n/a	n/a	GCF_000002195.2	Amel_4.0	Chromosome	RefSeq suppressed
n/a	n/a	GCF_000002195.1	Amel_2.0	Chromosome	RefSeq suppressed

Comment

Contact ncbi-contacts@bcm.tmc.edu for more information.
Amel_4.5 is an improved assembly created by using ABI SOLiD sequence and Roche 454 paired-end sequence to superscaffold and fill gaps in the Amel_4.0 assembly using the Atlas-link software. The contig-level assemblies were prepared using ... the Atlas assembly system.  more

Global statistics

Total sequence length	250,270,657
Total ungapped length	229,107,307
Gaps between scaffolds	324
Number of scaffolds	5,644
Scaffold N50	997,192
Scaffold L50	65
Number of contigs	16,501
Contig N50	45,688
Contig L50	1,390
Total number of chromosomes and plasmids	16
Number of component sequences (WGS or clone)	16,501

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM000054.5	=	NC_007070.3	0
Linkage Group LG2	CM000055.5	=	NC_007071.3	0
Linkage Group LG3	CM000059.5	=	NC_007072.3	0
Linkage Group LG4	CM000060.5	=	NC_007073.3	0
Linkage Group LG5	CM000058.5	=	NC_007074.3	0
Linkage Group LG6	CM000056.5	=	NC_007075.3	0
Linkage Group LG7	CM000063.5	=	NC_007076.3	0
Linkage Group LG8	CM000061.5	=	NC_007077.3	0
Linkage Group LG9	CM000062.5	=	NC_007078.3	0
Linkage Group LG10	CM000068.5	=	NC_007079.3	0
Linkage Group LG11	CM000057.5	=	NC_007080.3	0
Linkage Group LG12	CM000067.5	=	NC_007081.3	0
Linkage Group LG13	CM000064.5	=	NC_007082.3	0
Linkage Group LG14	CM000065.5	=	NC_007083.3	0
Linkage Group LG15	CM000066.5	=	NC_007084.3	0
Linkage Group LG16	CM000069.5	=	NC_007085.3	0
unplaced	n/a	n/a	n/a	5,304

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	250,270,657	5,644	229,107,307	997,192	10,857	324
Linkage Group LG1	29,893,408	43	27,319,901	890,726	988	42
Linkage Group LG2	15,549,267	20	14,400,797	1,519,436	468	19
Linkage Group LG3	13,234,341	19	12,031,717	898,175	444	18
Linkage Group LG4	12,718,334	16	11,825,715	1,868,461	381	15
Linkage Group LG5	14,363,272	20	13,192,408	1,195,175	444	19
Linkage Group LG6	18,472,937	38	16,206,952	1,066,013	576	37
Linkage Group LG7	13,219,345	24	11,812,974	764,393	500	23
Linkage Group LG8	13,546,544	21	12,381,912	1,011,691	548	20
Linkage Group LG9	11,120,453	12	10,407,060	1,871,057	390	11
Linkage Group LG10	12,965,953	29	11,372,982	802,473	414	28
Linkage Group LG11	14,726,556	20	13,578,127	1,564,475	533	19
Linkage Group LG12	11,902,654	17	10,927,831	2,866,936	426	16
Linkage Group LG13	10,288,499	15	9,321,972	1,157,304	284	14
Linkage Group LG14	10,253,655	15	9,333,258	1,130,295	292	14
Linkage Group LG15	10,167,229	22	8,921,848	1,411,413	421	21
Linkage Group LG16	7,207,165	9	6,689,459	1,659,631	320	8
unplaced	30,641,045	5,304	29,382,394	56,022	3,428	0

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Amel_4.5

See Genome Information for Apis mellifera

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

Comment

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