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Amel_4.5

Organism name:
Apis mellifera (honey bee)
Infraspecific name:
Strain: DH4
BioSample:
SAMN00002455
BioProject:
PRJNA10625
Submitter:
Human Genome Sequencing Center
Date:
2011/01/14
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000002195.1 (latest)
RefSeq assembly accession:
GCF_000002195.4 (suppressed)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for GenBank version
WGS Project:
AADG06
Assembly method:
Atlas assembly system v. before 2011
Genome coverage:
8x
Sequencing technology:
Sanger; SOLiD; 454

IDs: 254398 [UID] 239898 [GenBank] 254398 [RefSeq]

See Genome Information for Apis mellifera

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Contact ncbi-contacts@bcm.tmc.edu for more information.
Amel_4.5 is an improved assembly created by using ABI SOLiD sequence and Roche 454 paired-end sequence to superscaffold and fill gaps in the Amel_4.0 assembly using the Atlas-link software. The contig-level assemblies were prepared using ... the Atlas assembly system.  more

Global statistics

Total sequence length250,270,657
Total ungapped length229,107,307
Gaps between scaffolds324
Number of scaffolds5,644
Scaffold N50997,192
Scaffold L5065
Number of contigs16,501
Contig N5045,688
Contig L501,390
Total number of chromosomes and plasmids16
Number of component sequences (WGS or clone)16,501

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000000085.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1CM000054.5=NC_007070.30
Linkage Group LG2CM000055.5=NC_007071.30
Linkage Group LG3CM000059.5=NC_007072.30
Linkage Group LG4CM000060.5=NC_007073.30
Linkage Group LG5CM000058.5=NC_007074.30
Linkage Group LG6CM000056.5=NC_007075.30
Linkage Group LG7CM000063.5=NC_007076.30
Linkage Group LG8CM000061.5=NC_007077.30
Linkage Group LG9CM000062.5=NC_007078.30
Linkage Group LG10CM000068.5=NC_007079.30
Linkage Group LG11CM000057.5=NC_007080.30
Linkage Group LG12CM000067.5=NC_007081.30
Linkage Group LG13CM000064.5=NC_007082.30
Linkage Group LG14CM000065.5=NC_007083.30
Linkage Group LG15CM000066.5=NC_007084.30
Linkage Group LG16CM000069.5=NC_007085.30
unplacedn/an/an/a5,304

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All250,270,6575,644229,107,307997,19210,857324
Linkage Group LG129,893,4084327,319,901890,72698842
Linkage Group LG215,549,2672014,400,7971,519,43646819
Linkage Group LG313,234,3411912,031,717898,17544418
Linkage Group LG412,718,3341611,825,7151,868,46138115
Linkage Group LG514,363,2722013,192,4081,195,17544419
Linkage Group LG618,472,9373816,206,9521,066,01357637
Linkage Group LG713,219,3452411,812,974764,39350023
Linkage Group LG813,546,5442112,381,9121,011,69154820
Linkage Group LG911,120,4531210,407,0601,871,05739011
Linkage Group LG1012,965,9532911,372,982802,47341428
Linkage Group LG1114,726,5562013,578,1271,564,47553319
Linkage Group LG1211,902,6541710,927,8312,866,93642616
Linkage Group LG1310,288,499159,321,9721,157,30428414
Linkage Group LG1410,253,655159,333,2581,130,29529214
Linkage Group LG1510,167,229228,921,8481,411,41342121
Linkage Group LG167,207,16596,689,4591,659,6313208
unplaced30,641,0455,30429,382,39456,0223,4280
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