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GRCz10

Description:
Genome Reference Consortium Zebrafish Build 10
Organism name:
Danio rerio (zebrafish)
Infraspecific name:
Strain: Tuebingen
BioSample:
SAMN03020626
Submitter:
Genome Reference Consortium
Date:
2014/09/02
Synonyms:
danRer10
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
reference genome
GenBank assembly accession:
GCA_000002035.3 (latest)
RefSeq assembly accession:
GCF_000002035.5 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
  • Data displayed for RefSeq version

IDs: 210611 [UID] 1202508 [GenBank] 1205278 [RefSeq]

See Genome Information for Danio rerio

There are 4 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length1,371,719,383
Total assembly gap length2,085,185
Gaps between scaffolds2,338
Number of scaffolds3,399
Scaffold N502,181,225
Scaffold L50153
Number of contigs22,852
Contig N501,258,148
Contig L50252
Total number of chromosomes and plasmids26

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000000175.4)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM002885.1=NC_007112.60
Chromosome 2CM002886.1=NC_007113.60
Chromosome 3CM002887.1=NC_007114.60
Chromosome 4CM002888.1=NC_007115.60
Chromosome 5CM002889.1=NC_007116.60
Chromosome 6CM002890.1=NC_007117.60
Chromosome 7CM002891.1=NC_007118.60
Chromosome 8CM002892.1=NC_007119.60
Chromosome 9CM002893.1=NC_007120.60
Chromosome 10CM002894.1=NC_007121.60
Chromosome 11CM002895.1=NC_007122.60
Chromosome 12CM002896.1=NC_007123.60
Chromosome 13CM002897.1=NC_007124.60
Chromosome 14CM002898.1=NC_007125.60
Chromosome 15CM002899.1=NC_007126.60
Chromosome 16CM002900.1=NC_007127.60
Chromosome 17CM002901.1=NC_007128.60
Chromosome 18CM002902.1=NC_007129.60
Chromosome 19CM002903.1=NC_007130.60
Chromosome 20CM002904.1=NC_007131.60
Chromosome 21CM002905.1=NC_007132.60
Chromosome 22CM002906.1=NC_007133.60
Chromosome 23CM002907.1=NC_007134.60
Chromosome 24CM002908.1=NC_007135.60
Chromosome 25CM002909.1=NC_007136.60
unplacedn/an/an/a1,035

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 158,871,9178758,807,8221,822,59359886
Chromosome 259,543,40313259,461,0331,497,460744131
Chromosome 362,385,9497662,317,6093,170,46765775
Chromosome 476,625,7126676,566,6936,477,67955965
Chromosome 571,715,91411471,624,7214,190,899846113
Chromosome 660,272,6339560,182,0111,983,58285594
Chromosome 774,082,18814473,986,4981,882,140867143
Chromosome 854,191,8319754,139,5771,636,85345996
Chromosome 956,892,77110656,822,7434,111,347632105
Chromosome 1045,574,2557645,526,6932,044,03642675
Chromosome 1145,107,27111745,036,6131,219,007636116
Chromosome 1249,229,54111849,126,2343,714,762969117
Chromosome 1351,780,2509951,716,5152,072,97057798
Chromosome 1451,944,5486651,883,0486,861,17557765
Chromosome 1547,771,1478447,693,2872,640,58373783
Chromosome 1655,381,98110155,284,3344,304,929913100
Chromosome 1753,345,11311453,267,9631,831,578690113
Chromosome 1851,008,5938750,909,5861,334,51893486
Chromosome 1948,790,3778848,722,8062,467,07361887
Chromosome 2055,370,96811755,294,1552,202,105684116
Chromosome 2145,895,7197445,826,4292,700,04866473
Chromosome 2239,226,2886139,171,9531,717,43051360
Chromosome 2346,272,3587046,200,7353,388,71767969
Chromosome 2442,251,1039242,183,5292,184,32961391
Chromosome 2536,898,7618236,838,2811,414,80854981
unplaced31,272,1961,03531,026,73449,5662,4600
MoleculeTotal
Length
Mitochondrion MT16,596
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