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Release 5

Organism name:
Drosophila melanogaster (fruit fly)
BioSample:
SAMN02803731
Submitter:
The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics
Date:
2007/10/22
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000001215.2 (replaced)
RefSeq assembly accession:
GCF_000001215.2 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
AABU01

IDs: 368298 [UID] 368298 [GenBank] 238028 [RefSeq]

See Genome Information for Drosophila melanogaster

There are 8 assemblies for this organism

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History (Show revision history)

Comment

This sequence is a scaffold of ordered and oriented sequence contigs from a whole genome shotgun assembly (WGS3). Gaps in the sequence are filled with Ns to the estimated size.
For further information about this sequence, including its location and ... relationship to other sequences, please visit our sequence archive Web site (http://www.fruitfly.org) or send email to bdgp@fruitfly.berkeley.edu.
The number of contigs is less than the number of accession numbers because some contigs have been replaced by others.

The CON records are the annotated heterochomatin from the FlyBase Consortium (GPID 13812). CM000456-CM000461 are from the chromosome arms, and DS483543-DS486008 are the unplaced (chrUn) sequences. FA000001 is the unordered assembly of those unplaced sequences.  more

Global statistics

Total sequence length139,485,381
Total assembly gap length2,659,325
Gaps between scaffolds0
Number of scaffolds2,479
Scaffold N5023,011,544
Scaffold L503
Number of contigs3,058
Contig N5021,485,538
Contig L503
Total number of chromosomes and plasmids8

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000001625.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XAE014298.4=NC_004354.31
Chromosome 2LAE014134.5=NT_033779.41
Chromosome 2RAE013599.4=NT_033778.31
Chromosome 3LAE014296.4=NT_037436.31
Chromosome 3RAE014297.2=NT_033777.21
Chromosome 4AE014135.3=NC_004353.30
Chromosome Yn/an/an/a1
UnFA000001.1=NS_000188.10
unplacedn/an/an/a2,466

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule139,465,8642,478136,806,53923,011,5445790
Chromosome XAllAssembled moleculeUnlocalized scaffolds22,626,93922,422,827204,11221122,536,83922,332,727204,11222,422,82722,422,827204,112330000
Chromosome 2LAllAssembled moleculeUnlocalized scaffolds23,380,41623,011,544368,87221123,309,21623,011,344297,87223,011,54423,011,544368,872422000
Chromosome 2RAllAssembled moleculeUnlocalized scaffolds24,435,46921,146,7083,288,76121123,868,54921,146,6082,721,94121,146,70821,146,7083,288,76126125000
Chromosome 3LAllAssembled moleculeUnlocalized scaffolds27,099,04824,543,5572,555,49121126,959,76524,543,4572,416,30824,543,55724,543,5572,555,49120119000
Chromosome 3RAllAssembled moleculeUnlocalized scaffolds30,422,56027,905,0532,517,50721130,169,35927,905,0532,264,30627,905,05327,905,0532,517,50714014000
Chromosome 4Assembled molecule1,351,85711,351,7571,351,85710
Chromosome YAllAssembled moleculeUnlocalized scaffolds347,0380347,038101242,8060242,806347,0380347,03856056000
unplacedAssembled molecule9,802,5372,4668,368,24812,8274550
MoleculeTotal
Length
Mitochondrion MT19,517
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