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IDs: 453308 [UID] 453138 [GenBank] 453308 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4090416 Source DNA and organism available from Brian Hedlund (brian.hedland@unlv.edu) Contacts: Brian Hedlund (brian.hedland@unlv.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use ... of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Name::GCF_000309885.1-RS_2024_03_27Annotation Date::03/27/2024 18:17:53Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.7Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::2,570CDSs (total)::2,510Genes (coding)::2,480CDSs (with protein)::2,480Genes (RNA)::60rRNAs::2, 2, 2 (5S, 16S, 23S)complete rRNAs::2, 2, 2 (5S, 16S, 23S)tRNAs::51ncRNAs::3Pseudo Genes (total)::30CDSs (without protein)::30Pseudo Genes (ambiguous residues)::0 of 30Pseudo Genes (frameshifted)::9 of 30Pseudo Genes (incomplete)::22 of 30Pseudo Genes (internal stop)::4 of 30Pseudo Genes (multiple problems)::5 of 30CRISPR Arrays::5##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Thermus oshimai JL-2collection_date::Missinglat_lon::Missingdepth::Missingalt_elev::Missingcountry::Missingenvironment::Marinenum_replicons::3ref_biomaterial::Missingbiotic_relationship::Free livingtrophic_level::Heterotrophrel_to_oxygen::Missingisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi06476Type Strain::NoFunding Program::DOE-CSP 2010Gene Calling Method::Prodigal 1.4, GenePRIMPTemperature Range::Thermophile##MIGS-Data-END##
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