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IDs: 292758 [UID] 289078 [GenBank] 292758 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4087360 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done ... by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::12/24/2023 09:37:01Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.6Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::2,070CDSs (total)::2,018Genes (coding)::1,997CDSs (with protein)::1,997Genes (RNA)::52rRNAs::1, 1, 1 (5S, 16S, 23S)complete rRNAs::1, 1, 1 (5S, 16S, 23S)tRNAs::46ncRNAs::3Pseudo Genes (total)::21CDSs (without protein)::21Pseudo Genes (ambiguous residues)::0 of 21Pseudo Genes (frameshifted)::6 of 21Pseudo Genes (incomplete)::14 of 21Pseudo Genes (internal stop)::3 of 21Pseudo Genes (multiple problems)::2 of 21CRISPR Arrays::6##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Thermotoga thermarum LA3, DSM 5069collection_date::Missinglat_lon::11.162815 41.780548depth::Missingalt_elev::Missingcountry::Djiboutienvironment::Missingnum_replicons::1ref_biomaterial::DSM 5069biotic_relationship::Free livingtrophic_level::Missingrel_to_oxygen::Anaerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi04365Type Strain::YesFunding Program::DOE-GEBA 2009Isolation Site::Continental solfataric spring; Africa, Djibouti, Lac AbbeTemperature Range::HyperthermophileTemperature Optimum::80CGram Staining::Gram-Diseases::None##MIGS-Data-END##
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