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ASM968894v1

Organism name:
Desulfosarcina alkanivorans (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PL12
BioSample:
SAMD00190778
BioProject:
PRJDB8884
Submitter:
The Institute of Low Temperature Science, Hokkaido University
Date:
2019/11/07
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_009688945.1 (latest)
RefSeq assembly accession:
GCF_009688945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT analysis v. 2.3.0
Genome coverage:
112x
Sequencing technology:
PacBio RS II

IDs: 5346921 [UID] 15474968 [GenBank] 15540868 [RefSeq]

See Genome Information for Desulfosarcina alkanivorans

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotated at DFAST https://dfast.nig.ac.jp/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/11/2024 02:32:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,407
CDSs (total)::6,347
Genes (coding)::6,295
CDSs (with protein)::6,295
Genes (RNA)::60
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::50
ncRNAs::4
Pseudo Genes (total)::52
CDSs (without protein)::52
Pseudo Genes (ambiguous residues)::0 of 52
Pseudo Genes (frameshifted)::9 of 52
Pseudo Genes (incomplete)::40 of 52
Pseudo Genes (internal stop)::9 of 52
Pseudo Genes (multiple problems)::5 of 52
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,324,708
Total ungapped length7,324,708
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_009688955.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP021874.1=NZ_AP021874.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,324,708

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfosarcina alkanivoransDesulfosarcina alkanivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009688965.1Desulfosarcina widdeliitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.9011.8611.91

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected