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Prevotella_sp_C561_V1

Organism name:
Prevotella sp. C561 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: C561
BioSample:
SAMN02463828
BioProject:
PRJNA41971
Submitter:
Broad Institute
Date:
2011/09/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000224595.1 (latest)
RefSeq assembly accession:
GCF_000224595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADCT01
Assembly method:
Newbler v. 2.3-PostRelease-11/19/2009
Genome coverage:
31x
Sequencing technology:
454

IDs: 303418 [UID] 302898 [GenBank] 303418 [RefSeq]

See Genome Information for Prevotella sp. C561

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Christopher D. Sibley, Tyler R. Field, Margot Grinwis, Christina S. Eshaghurshan and Michael G. Surette (Department ... of Microbiology and Infectious Diseases, University of Calgary, Faculty of Medicine, Calgary, Alberta T2N 4N1, Canada).
Bacteria provided by Christopher D. Sibley, Tyler R. Field, Margot Grinwis, Christina S. Eshaghurshan and Michael G. Surette (Department of Microbiology and Infectious Diseases, University of Calgary, Faculty of Medicine, Calgary, Alberta T2N 4N1, Canada). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length4,031,149
Total ungapped length3,997,174
Gaps between scaffolds0
Number of scaffolds76
Scaffold N50270,721
Scaffold L506
Number of contigs195
Contig N5077,844
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)195

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,031,149763,997,174270,7211190

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Prevotella sp. C561Prevotella sp. C561

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900187995.1Prevotella jejunisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.6579.2686.89

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna