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ASM72170v1

Organism name:
Actinoplanes subtropicus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL B-24665
BioSample:
SAMN02645318
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000721705.1 (latest)
RefSeq assembly accession:
GCF_000721705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JOJL01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
120x
Sequencing technology:
Illumina

IDs: 193981 [UID] 1160778 [GenBank] 1166398 [RefSeq]

See Genome Information for Actinoplanes subtropicus

History (Show revision history)

Comment

Bacteria available from NRRL

Global statistics

Total sequence length11,257,336
Total ungapped length11,257,336
Number of contigs216
Contig N50239,119
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)216

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced11,257,33621611,257,336239,11900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinoplanes subtropicusActinoplanes subtropicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000379645.1Actinoplanes globisporustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.0049.3150.52

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected