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ASM2060v1

Organism name:
Agathobacter rectalis ATCC 33656 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 33656
BioSample:
SAMN02603082
BioProject:
PRJNA29071
Submitter:
Center for Genome Sciences, Washington University School of Medicine
Date:
2009/06/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000020605.1 (latest)
RefSeq assembly accession:
GCF_000020605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 41648 [UID] 21408 [GenBank] 41648 [RefSeq]

See Genome Information for Agathobacter rectalis

There are 427 assemblies for this organism

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History (Show revision history)

Comment

This genome was sequenced by the Genome Sequencing Center, Washington University School of Medicine, Washington University in St. Louis.
Source DNA is available from Jeffrey I. Gordon, jgordon@wustl.edu
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information ... about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/28/2024 11:12:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,357
CDSs (total)::3,278
Genes (coding)::3,213
CDSs (with protein)::3,213
Genes (RNA)::79
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::65
CDSs (without protein)::65
Pseudo Genes (ambiguous residues)::0 of 65
Pseudo Genes (frameshifted)::13 of 65
Pseudo Genes (incomplete)::53 of 65
Pseudo Genes (internal stop)::9 of 65
Pseudo Genes (multiple problems)::8 of 65
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,449,685
Total ungapped length3,449,685
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000020615.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001107.1=NC_012781.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,449,685

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Agathobacter rectalis ATCC 33656Agathobacter rectalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022453685.1Agathobacter rectalissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022453685.1Agathobacter rectalissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.0099.95
Best-match type99.99100.0099.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna