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ASM17885v1

Organism name:
Ktedonobacter racemifer DSM 44963 (GNS bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SOSP1-21
BioSample:
SAMN02441796
BioProject:
PRJNA27943
Submitter:
US DOE Joint Genome Institute (JGI-PGF)
Date:
2010/06/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000178855.1 (latest)
RefSeq assembly accession:
GCF_000178855.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADVG01

IDs: 225538 [UID] 225518 [GenBank] 225538 [RefSeq]

See Genome Information for Ktedonobacter racemifer

There are 3 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 4083037
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done ... by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
We are labeling this project as Permanent Draft. No additional work on this project is planned at this time.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length13,661,586
Total ungapped length13,661,541
Gaps between scaffolds0
Number of scaffolds10
Scaffold N502,766,182
Scaffold L503
Number of contigs12
Contig N502,281,316
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)10

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced13,661,5861013,661,5412,766,18220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ktedonobacter racemifer DSM 44963Ktedonobacter racemifer

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016587375.1Ktedonobacter robiniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.6051.8166.04

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected