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ASM1107479v1

Organism name:
Marinobacter salicampi (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ISL-40
BioSample:
SAMN14253721
BioProject:
PRJNA609453
Submitter:
Zhejiang University
Date:
2020/03/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_011074795.1 (latest)
RefSeq assembly accession:
GCF_011074795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAAMPF01
Assembly method:
ABySS v. 2.0.2
Expected final version:
yes
Genome coverage:
99.78x
Sequencing technology:
Illumina

IDs: 6106551 [UID] 17381558 [GenBank] 17950168 [RefSeq]

See Genome Information for Marinobacter salicampi

History (Show revision history)

Comment

Global statistics

Total sequence length4,345,659
Total ungapped length4,345,659
Number of contigs36
Contig N50218,776
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)36

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,345,659364,345,659218,77600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Marinobacter salicampiMarinobacter salicampi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004792665.1Marinobacter orientalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.105.956.46

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected