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MYCGR v2.0

Organism name:
Zymoseptoria tritici IPO323 (ascomycete fungi)
Infraspecific name:
Strain: IPO323
BioSample:
SAMN02746078
BioProject:
PRJNA19047
Submitter:
DOE Joint Genome Institute
Date:
2011/07/06
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000219625.1 (latest)
RefSeq assembly accession:
GCF_000219625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACPE01
Assembly method:
JAZZ v. 1.0
Genome coverage:
8.9X
Sequencing technology:
Sanger

IDs: 404618 [UID] 293958 [GenBank] 404618 [RefSeq]

See Genome Information for Zymoseptoria tritici

There are 60 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov/Mgraminicola
JGI Project ID: 4000758
The DNA was provided by G.H.J. Kema (gert.kema@wur.nl)
The strain is available from Fungal Biodiversity Center, http://www.cbs.knaw.nl
Contacts: Stephen B. Goodwin (sgoodwin@purdue.edu)
 Gert H. J. Kema (gert.Kema@wur.nl)
 Igor Grigoriev (ivgrigoriev@lbl.gov)
Assembly and annotation done by JGI.
The VEuPathDB ... Bioinformatics Resource Center (www.veupathdb.org) may also have contributed to the annotation of this genome. Annotation and related data can be viewed and updated at http://veupathdb.org and inquiries can be sent to help@veupathdb.org.  more

Global statistics

Total sequence length39,686,251
Total ungapped length39,678,910
Gaps between scaffolds0
Number of scaffolds21
Scaffold N502,674,951
Scaffold L506
Number of contigs24
Contig N502,665,280
Contig L506
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)24

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000219635.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CM001196.1=NC_018218.1
Chromosome 2CM001197.1=NC_018217.1
Chromosome 3CM001198.1=NC_018216.1
Chromosome 4CM001199.1=NC_018215.1
Chromosome 5CM001200.1=NC_018214.1
Chromosome 6CM001201.1=NC_018213.1
Chromosome 7CM001202.1=NC_018212.1
Chromosome 8CM001203.1=NC_018211.1
Chromosome 9CM001204.1=NC_018210.1
Chromosome 10CM001205.1=NC_018209.1
Chromosome 11CM001206.1=NC_018208.1
Chromosome 12CM001207.1=NC_018207.1
Chromosome 13CM001208.1=NC_018206.1
Chromosome 14CM001209.1=NC_018205.1
Chromosome 15CM001210.1=NC_018204.1
Chromosome 16CM001211.1=NC_018203.1
Chromosome 17CM001212.1=NC_018202.1
Chromosome 18CM001213.1=NC_018201.1
Chromosome 19CM001214.1=NC_018200.1
Chromosome 20CM001215.1=NC_018199.1
Chromosome 21CM001216.1=NC_018198.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All39,686,2512139,678,9102,674,95130
Chromosome 16,088,79716,088,7976,088,79700
Chromosome 23,860,11113,860,1113,860,11100
Chromosome 33,505,38113,505,3813,505,38100
Chromosome 42,880,01112,880,0112,880,01100
Chromosome 52,861,80312,861,8032,861,80300
Chromosome 62,674,95112,673,6072,674,95110
Chromosome 72,665,28012,665,2802,665,28000
Chromosome 82,443,57212,443,5722,443,57200
Chromosome 92,142,47512,142,4752,142,47500
Chromosome 101,682,57511,682,5751,682,57500
Chromosome 111,624,29211,624,2921,624,29200
Chromosome 121,462,62411,462,6241,462,62400
Chromosome 131,185,77411,185,7741,185,77400
Chromosome 14773,0981773,098773,09800
Chromosome 15639,5011639,501639,50100
Chromosome 16607,0441607,044607,04400
Chromosome 17584,0991584,099584,09900
Chromosome 18573,6981567,701573,69820
Chromosome 19549,8471549,847549,84700
Chromosome 20472,1051472,105472,10500
Chromosome 21409,2131409,213409,21300