U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM127493v1

Organism name:
Priestia koreensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 16467
BioSample:
SAMN03999406
BioProject:
PRJNA293250
Submitter:
Fujian Academy of Agricultural Sciences
Date:
2015/08/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001274935.1 (latest)
RefSeq assembly accession:
GCF_001274935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LILC01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina HiSeq

IDs: 476541 [UID] 2300678 [GenBank] 2309888 [RefSeq]

See Genome Information for Priestia koreensis

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/19/2015 12:09:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::4,656
CDS::4,403
Pseudo Genes::178
CRISPR Arrays::2
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::71
ncRNA::1
Frameshifted Genes::23
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,603,584
Total ungapped length4,603,584
Number of contigs42
Contig N50349,667
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)42

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,603,584424,603,584349,66700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Priestia koreensisPriestia koreensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006094495.1Priestia megateriumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.752.191.76

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected