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ASM1230v1

Organism name:
Psychrobacter arcticus 273-4 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 273-4
BioSample:
SAMN02598544
BioProject:
PRJNA9633
Submitter:
DOE Joint Genome Institute
Date:
2005/07/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000012305.1 (latest)
RefSeq assembly accession:
GCF_000012305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 33408 [UID] 13108 [GenBank] 33408 [RefSeq]

See Genome Information for Psychrobacter arcticus

There are 2 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Hector L. Ayala-del-Rio (hlayala@hpcf.upr.edu)
Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of ... 30 and the total error rate is less than one per 50000.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/23/2023 01:00:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,260
CDSs (total)::2,196
Genes (coding)::2,138
CDSs (with protein)::2,138
Genes (RNA)::64
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::58
CDSs (without protein)::58
Pseudo Genes (ambiguous residues)::0 of 58
Pseudo Genes (frameshifted)::14 of 58
Pseudo Genes (incomplete)::52 of 58
Pseudo Genes (internal stop)::10 of 58
Pseudo Genes (multiple problems)::14 of 58
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,650,701
Total ungapped length2,650,701
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000012315.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000082.1=NC_007204.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,650,701

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Psychrobacter arcticus 273-4Psychrobacter arcticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000013905.1Psychrobacter cryohalolentistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.2876.3465.26

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected