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ASM1286v1

Organism name:
Carboxydothermus hydrogenoformans Z-2901 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: Z-2901
BioSample:
SAMN02603998
BioProject:
PRJNA253
Submitter:
TIGR
Date:
2005/10/21
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000012865.1 (latest)
RefSeq assembly accession:
GCF_000012865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 33968 [UID] 13668 [GenBank] 33968 [RefSeq]

See Genome Information for Carboxydothermus hydrogenoformans

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/12/2023 10:42:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,529
CDSs (total)::2,463
Genes (coding)::2,448
CDSs (with protein)::2,448
Genes (RNA)::66
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::50
ncRNAs::4
Pseudo Genes (total)::15
CDSs (without protein)::15
Pseudo Genes (ambiguous residues)::0 of 15
Pseudo Genes (frameshifted)::6 of 15
Pseudo Genes (incomplete)::9 of 15
Pseudo Genes (internal stop)::1 of 15
Pseudo Genes (multiple problems)::1 of 15
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,401,520
Total ungapped length2,401,520
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000012875.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000141.1=NC_007503.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,401,520

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Carboxydothermus hydrogenoformans Z-2901Carboxydothermus hydrogenoformans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000427565.1Carboxydothermus ferrireducenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.7687.3385.90

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected