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Source database (GenBank or RefSeq) File type

ASM278785v1

Organism name:

Candidatus Zambryskibacteria bacterium CG11_big_fil_rev_8_21_14_0_20_42_18 (bacteria)

Taxonomy check:

Inconclusive

Isolate:

CG11_big_fil_rev_8_21_14_0_20_42_18

BioSample:

SAMN06659545

BioProject:

PRJNA362739

Submitter:

DOE Joint Genome Institute

Date:

2017/11/14

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_002787855.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

PCVB01

Assembly method:

IDBA-UD v. 02.2016

Expected final version:

yes

Genome coverage:

10x

Sequencing technology:

Illumina HiSeq

IDs: 1447531 [UID] 5668778 [GenBank]

See Genome Information for Candidatus Zambryskibacteria bacterium CG11_big_fil_rev_8_21_14_0_20_42_18

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002787855.1	n/a	n/a	ASM278785v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/05/2017 17:16:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::550
CDS (total)::509
Genes (coding)::494
CDS (coding)::494
Genes (RNA)::41
rRNAs::1, 1 (5S, 16S)
complete rRNAs::1 (5S)
partial rRNAs::1 (16S)
tRNAs::38
ncRNAs::1
Pseudo Genes (total)::15
Pseudo Genes (ambiguous residues)::12 of 15
Pseudo Genes (frameshifted)::0 of 15
Pseudo Genes (incomplete)::3 of 15
Pseudo Genes (internal stop)::1 of 15
Pseudo Genes (multiple problems)::1 of 15
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	444,306
Total ungapped length	442,603
Gaps between scaffolds	0
Number of scaffolds	31
Scaffold N50	17,148
Scaffold L50	8
Number of contigs	77
Contig N50	12,571
Contig L50	12
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	31

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	na	0.00	0.00

Assembly

Genome Assembly

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ASM278785v1

See Genome Information for Candidatus Zambryskibacteria bacterium CG11_big_fil_rev_8_21_14_0_20_42_18

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result