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Source database (GenBank or RefSeq) File type

ASM164753v1

Organism name:: Acinetobacter sp. SFA (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: SFA
BioSample:: SAMN04505917
BioProject:: PRJNA312759
Submitter:: University of aberdeen
Date:: 2016/05/19
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_001647535.1 (latest)
RefSeq assembly accession:: GCF_001647535.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: LSZI01
Assembly method:: Velvet v. SEP-2015
Expected final version:: yes
Genome coverage:: 30.0x
Sequencing technology:: Illumina HiSeq

IDs: 742171 [UID] 3246848 [GenBank] 3253518 [RefSeq]

See Genome Information for Acinetobacter sp. SFA

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001647535.1	=	GCF_001647535.1	ASM164753v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::02/23/2016 17:14:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,945
CDS (total)::2,858
Genes (coding)::2,813
CDS (coding)::2,813
Genes (RNA)::87
rRNAs::4, 1, 4 (5S, 16S, 23S)
complete rRNAs::4, 1, 1 (5S, 16S, 23S)
partial rRNAs::3 (23S)
tRNAs::74
ncRNAs::4
Pseudo Genes (total)::45
Pseudo Genes (ambiguous residues)::0 of 45
Pseudo Genes (frameshifted)::10 of 45
Pseudo Genes (incomplete)::25 of 45
Pseudo Genes (internal stop)::13 of 45
Pseudo Genes (multiple problems)::3 of 45
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,140,448
Total ungapped length	3,139,862
Gaps between scaffolds	0
Number of scaffolds	22
Scaffold N50	267,531
Scaffold L50	5
Number of contigs	24
Contig N50	200,188
Contig L50	6
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	22

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	98.50	90.55	88.28

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ASM164753v1

See Genome Information for Acinetobacter sp. SFA

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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