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ASM129597v1

Organism name:
Brevundimonas sp. AAP58 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AAP58
BioSample:
SAMN02927139
BioProject:
PRJNA255559
Submitter:
Institute of Microbiology, ASCR
Date:
2015/09/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001295975.1 (latest)
RefSeq assembly accession:
GCF_001295975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LJHU01
Assembly method:
Velvet v. 1.2.10
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
Illumina HiSeq

IDs: 487351 [UID] 2339338 [GenBank] 2341118 [RefSeq]

See Genome Information for Brevundimonas sp. AAP58

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/09/2015 15:41:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::2,981
CDS::2,827
Pseudo Genes::107
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::43
ncRNA::1
Frameshifted Genes::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,966,829
Total ungapped length2,966,829
Number of contigs138
Contig N5037,822
Contig L5024
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)138

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,966,8291382,966,82937,82200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Brevundimonas sp. AAP58Brevundimonas sp. AAP58

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000701445.1Brevundimonas bacteroidestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.7777.3071.20

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna