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ASM47324v1

Organism name:
Bacillus infantis NRRL B-14911 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL B-14911
BioSample:
SAMN02604281
BioProject:
PRJNA212797
Submitter:
USDA-ARS U.S. Meat Animal Research Center
Date:
2013/09/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000473245.1 (latest)
RefSeq assembly accession:
GCF_000473245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
PacBioToCA v. 06/25/2013; Celera Assembler v. 7.0
Genome coverage:
25x of error-corrected reads > 6kb
Sequencing technology:
Pacific Biosciences

IDs: 66701 [UID] 792178 [GenBank] 817228 [RefSeq]

See Genome Information for Bacillus infantis

There are 14 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/03/2024 16:06:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,888
CDSs (total)::4,769
Genes (coding)::4,738
CDSs (with protein)::4,738
Genes (RNA)::119
rRNAs::9, 9, 9 (5S, 16S, 23S)
complete rRNAs::9, 9, 9 (5S, 16S, 23S)
tRNAs::86
ncRNAs::6
Pseudo Genes (total)::31
CDSs (without protein)::31
Pseudo Genes (ambiguous residues)::0 of 31
Pseudo Genes (frameshifted)::15 of 31
Pseudo Genes (incomplete)::13 of 31
Pseudo Genes (internal stop)::5 of 31
Pseudo Genes (multiple problems)::1 of 31
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,884,713
Total ungapped length4,884,713
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000473255.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006643.1=NC_022524.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,884,713

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus infantis NRRL B-14911Bacillus infantis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900445365.1Cytobacillus firmussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.152.622.67

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena