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gbb39v01

Description:
Bordetella bronchiseptica MBORD785 v01
Organism name:
Bordetella bronchiseptica MBORD785 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MBORD785
BioSample:
SAMN02231428
BioProject:
PRJNA202147
Submitter:
JCVI
Date:
2014/05/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000690495.1 (latest)
RefSeq assembly accession:
GCF_000690495.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JGXU01
Assembly method:
Celera v. 7.0
Expected final version:
yes
Genome coverage:
43.4x
Sequencing technology:
Illumina HiSeq 2000

IDs: 178281 [UID] 1068958 [GenBank] 1370338 [RefSeq]

See Genome Information for Bordetella bronchiseptica

Pathogen Detection Resources

There are 104 assemblies for this organism

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History (Show revision history)

Comment

This project has been funded in whole or in part with federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services through the Genomic Sequencing Centers for Infectious ... Diseases under contract number HHSN272200900007C.  more

Global statistics

Total sequence length5,152,034
Total ungapped length5,152,034
Number of contigs102
Contig N5098,342
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)102

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,152,0341025,152,03498,34200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bordetella bronchiseptica MBORD785Bordetella bronchiseptica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900445725.1Bordetella bronchisepticasuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900445725.1Bordetella bronchisepticasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1997.6797.26
Best-match type99.1997.6797.26

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna