Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

Esch_coli_HVH_148_4-3192490_V1

Organism name:: Escherichia coli HVH 148 (4-3192490) (E. coli)
Taxonomy check:: OK
Infraspecific name:: Strain: HVH 148 (4-3192490)
BioSample:: SAMN01885793
BioProject:: PRJNA186180
Submitter:: Broad Institute
Date:: 2013/11/01
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_000495015.1 (latest)
RefSeq assembly accession:: GCF_000495015.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: AVXH01
Assembly method:: allpaths v. R46382
Genome coverage:: 225.0x
Sequencing technology:: Illumina

IDs: 79421 [UID] 852068 [GenBank] 853338 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 265830 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000495015.1	=	GCF_000495015.1	Esch_coli_HVH_148_4-3192490_V1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length	5,332,237
Total ungapped length	5,231,226
Gaps between scaffolds	0
Number of scaffolds	13
Scaffold N50	1,714,655
Scaffold L50	2
Number of contigs	75
Contig N50	194,389
Contig L50	9
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	75

	ANI	Query coverage	Subject coverage
Declared type	99.57	90.42	93.85
Best-match type	99.57	90.42	93.85

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

Esch_coli_HVH_148_4-3192490_V1

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 265830 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result