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gls454075v01

Organism name:
Leptospira interrogans str. Kito (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Kito
BioSample:
SAMN01162021
BioProject:
PRJNA167240
Submitter:
J. Craig Venter Institute
Date:
2013/03/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000347255.1 (latest)
RefSeq assembly accession:
GCF_000347255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ANCF01
Assembly method:
Celera Assembler v. 7.0
Genome coverage:
57.2x
Sequencing technology:
Illumina GAIIx

IDs: 558308 [UID] 558308 [GenBank] 734788 [RefSeq]

See Genome Information for Leptospira interrogans

There are 396 assemblies for this organism

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History (Show revision history)

Comment

This strain is part of the Leptospira Genomics and Human Health project as part of the Genome Sequencing Centers for Infectious Diseases contract. http://gsc.jcvi.org/projects/gsc/leptospira/index.shtml.

Source DNA and/or bacteria are available from the BEI Resource repository. http://beiresources.org

This project has been funded ... in whole or in part with federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services through the Genomic Sequencing Centers for Infectious Diseases under contract number HHSN272200900007C.  more

Global statistics

Total sequence length4,684,013
Total ungapped length4,684,013
Number of contigs197
Contig N5041,578
Contig L5035
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)197

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,684,0131974,684,01341,57800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leptospira interrogans str. KitoLeptospira interrogans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000343165.1Leptospira interrogans serovar Icterohaemorrhagiae str. RGAtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000343165.1Leptospira interroganstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6392.8094.49
Best-match type98.6392.8094.49

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna