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GM84.fsa

Organism name:
Pseudomonas sp. GM84 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: GM84
BioSample:
SAMN00839651
BioProject:
PRJNA83105
Submitter:
Oak Ridge National Lab
Date:
2012/07/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000282535.1 (latest)
RefSeq assembly accession:
GCF_000282535.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AKJC01
Assembly method:
CLC Genomics Workbench v. 4.9
Genome coverage:
256x
Sequencing technology:
Illumina HiSeq2000 paired-end

IDs: 405748 [UID] 403988 [GenBank] 405748 [RefSeq]

See Genome Information for Pseudomonas sp. GM84

Pathogen Detection Resources

History (Show revision history)

Comment

Source DNA available from Dale Pelletier at Bioscience Division, Oak Ridge National Laboratory, Oak Ridge, TN

Global statistics

Total sequence length5,818,772
Total ungapped length5,818,772
Number of contigs384
Contig N5024,795
Contig L5074
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)384

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,818,7723845,818,77224,79500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas sp. GM84Pseudomonas sp. GM84

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000688275.1Pseudomonas plecoglossicidasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.6675.9882.68

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna