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ASM100604v1

Organism name:
Geoglobus ahangari (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: 234
BioSample:
SAMN02988852
BioProject:
PRJNA258102
Submitter:
Michigan State University
Date:
2015/05/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001006045.1 (latest)
RefSeq assembly accession:
GCF_001006045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Velvet v. 1.2.10
Genome coverage:
500x
Sequencing technology:
Illumina

IDs: 338891 [UID] 1771708 [GenBank] 1837418 [RefSeq]

See Genome Information for Geoglobus ahangari

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/03/2023 02:56:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,091
CDSs (total)::2,040
Genes (coding)::2,034
CDSs (with protein)::2,034
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::6
CDSs (without protein)::6
Pseudo Genes (ambiguous residues)::0 of 6
Pseudo Genes (frameshifted)::2 of 6
Pseudo Genes (incomplete)::3 of 6
Pseudo Genes (internal stop)::1 of 6
CRISPR Arrays::7
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,770,093
Total ungapped length1,770,093
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001006055.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP011267.1=NZ_CP011267.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,770,093

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Geoglobus ahangariGeoglobus ahangari

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016757965.1Archaeoglobus neptuniustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.840.340.28

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected