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ASM22064v1

Organism name:
Methanococcus maripaludis X1 (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: X1
BioSample:
SAMN02603718
BioProject:
PRJNA68579
Submitter:
Ecosystem Sciences, Commonwealth Scientific and Industrial Research Organisation
Date:
2011/07/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000220645.1 (latest)
RefSeq assembly accession:
GCF_000220645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 295728 [UID] 294788 [GenBank] 295728 [RefSeq]

See Genome Information for Methanococcus maripaludis

There are 29 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/07/2024 00:50:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,914
CDSs (total)::1,867
Genes (coding)::1,853
CDSs (with protein)::1,853
Genes (RNA)::47
rRNAs::3, 2, 2 (5S, 16S, 23S)
complete rRNAs::3, 2, 2 (5S, 16S, 23S)
tRNAs::38
ncRNAs::2
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::10 of 14
Pseudo Genes (incomplete)::4 of 14
Pseudo Genes (internal stop)::2 of 14
Pseudo Genes (multiple problems)::2 of 14
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,746,697
Total ungapped length1,746,697
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000220655.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002913.1=NC_015847.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,746,697

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methanococcus maripaludis X1Methanococcus maripaludis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017875815.1Methanococcus maripaludissyntype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017875815.1Methanococcus maripaludissyntype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.4288.4988.18
Best-match type97.4288.4988.18

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna