U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM22120v1

Organism name:
Rickettsia conorii subsp. heilongjiangensis 054 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 054
BioSample:
SAMN02602971
BioProject:
PRJNA66907
Submitter:
Academy of Military Medical Sciences, The Institute of Microbiology and Epidemiology, China
Date:
2011/07/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000221205.1 (latest)
RefSeq assembly accession:
GCF_000221205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 296258 [UID] 296048 [GenBank] 296258 [RefSeq]

See Genome Information for Rickettsia conorii

There are 19 assemblies for this organism

See more

History (Show revision history)

Comment

Genome was manually curated based on annotation generated by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.
Source DNA is available from rickettsia heilongjiangensis cultured in Vero cells. The bacteria is ... kept in our lab State Key Laboratory of Pathogens and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/16/2024 00:35:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,481
CDSs (total)::1,441
Genes (coding)::1,319
CDSs (with protein)::1,319
Genes (RNA)::40
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::33
ncRNAs::4
Pseudo Genes (total)::122
CDSs (without protein)::122
Pseudo Genes (ambiguous residues)::0 of 122
Pseudo Genes (frameshifted)::81 of 122
Pseudo Genes (incomplete)::46 of 122
Pseudo Genes (internal stop)::45 of 122
Pseudo Genes (multiple problems)::44 of 122
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,278,471
Total ungapped length1,278,471
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000221215.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002912.1=NC_015866.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,278,471

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rickettsia conorii subsp. heilongjiangensis 054Rickettsia conorii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000007025.1Rickettsia conorii str. Malish 7suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000007025.1Rickettsia conoriisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.4196.1796.91
Best-match type97.4196.1796.91

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna