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ASM187632v1

Organism name:
Corynebacterium ulcerans (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: KZN-2016-48390
BioSample:
SAMN05729438
BioProject:
PRJNA341832
Submitter:
National Institute for Communicable Diseases
Date:
2016/11/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001876325.1 (latest)
RefSeq assembly accession:
GCF_001876325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MIOS01
Assembly method:
CLC NGS Cell v. 8
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina MiSeq

IDs: 888581 [UID] 3721698 [GenBank] 3723748 [RefSeq]

See Genome Information for Corynebacterium ulcerans

There are 44 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/12/2016 12:30:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,318
CDS (total)::2,260
Genes (coding)::2,225
CDS (coding)::2,225
Genes (RNA)::58
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::52
ncRNAs::3
Pseudo Genes (total)::35
Pseudo Genes (ambiguous residues)::0 of 35
Pseudo Genes (frameshifted)::17 of 35
Pseudo Genes (incomplete)::15 of 35
Pseudo Genes (internal stop)::7 of 35
Pseudo Genes (multiple problems)::4 of 35
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,541,110
Total ungapped length2,541,110
Number of contigs31
Contig N50271,130
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)31

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,541,110312,541,110271,13000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium ulceransCorynebacterium ulcerans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016727365.1Corynebacterium ulceranstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016727365.1Corynebacterium ulceranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6493.1196.43
Best-match type98.6493.1196.43

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna