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Cjaponica_Koshiki_v1.0

Organism name:
Chionographis japonica (monocots)
BioSample:
SAMEA112248551
BioProject:
PRJEB58129
Submitter:
Leibniz Institute of Plant Genetics and Crop Plant Research
Date:
2023/06/27
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_947650365.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CANTAL01
Assembly method:
Hifiasm
Genome coverage:
59x
Sequencing technology:
Illumina Novaseq 6000, PacBio Sequel II

IDs: 17162481 [UID] 44021788 [GenBank]

See Genome Information for Chionographis japonica

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length1,526,120,517
Total ungapped length1,525,684,017
Gaps between scaffolds0
Number of scaffolds3,263
Scaffold N5081,106,678
Scaffold L508
Number of contigs4,136
Contig N501,601,794
Contig L50258
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)3,263

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_947650364.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OX393549.1n/an/a0
Chromosome 2OX393550.1n/an/a0
Chromosome 3OX393551.1n/an/a0
Chromosome 4OX393552.1n/an/a0
Chromosome 5OX393553.1n/an/a0
Chromosome 6OX393554.1n/an/a0
Chromosome 7OX393555.1n/an/a0
Chromosome 8OX393556.1n/an/a0
Chromosome 9OX393557.1n/an/a0
Chromosome 10OX393558.1n/an/a0
Chromosome 11OX393559.1n/an/a0
Chromosome 12OX393560.1n/an/a0
unplacedn/an/an/a3,251

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,526,120,5173,2631,525,684,01781,106,6788730
Chromosome 1137,288,5821137,241,082137,288,582950
Chromosome 2122,501,9561122,460,956122,501,956820
Chromosome 3100,114,3071100,071,307100,114,307860
Chromosome 494,910,602194,872,10294,910,602770
Chromosome 593,213,652193,181,15293,213,652650
Chromosome 688,324,437188,288,93788,324,437710
Chromosome 785,877,776185,845,77685,877,776640
Chromosome 881,106,678181,074,17881,106,678650
Chromosome 974,041,352174,008,35274,041,352660
Chromosome 1073,566,711173,532,71173,566,711680
Chromosome 1169,903,626169,875,12669,903,626570
Chromosome 1269,886,411169,866,41169,886,411400
unplaced435,384,4273,251435,365,927765,049370