U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



IMG-taxon 2675903062 annotated assembly

Organism name:
Streptomyces wuyuanensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 4.7042
BioSample:
SAMN05444921
BioProject:
PRJEB16195
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900103455.1 (latest)
RefSeq assembly accession:
GCF_900103455.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNHI01
Genome coverage:
90x

IDs: 865951 [UID] 3637248 [GenBank] 4892648 [RefSeq]

See Genome Information for Streptomyces wuyuanensis

History (Show revision history)

Comment

Global statistics

Total sequence length8,039,558
Total ungapped length8,036,298
Gaps between scaffolds0
Number of scaffolds52
Scaffold N50270,588
Scaffold L5011
Number of contigs60
Contig N50235,455
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)52

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,039,558528,036,298270,58880

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces wuyuanensisStreptomyces wuyuanensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_005795905.1Streptomyces marianiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.8166.4859.30

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected