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Source database (GenBank or RefSeq) File type

Oar_v4.0

Organism name:

Ovis aries (sheep)

Infraspecific name:

Breed: Texel

BioSample:

SAMN00116405

BioProject:

PRJNA169880

Submitter:

International Sheep Genome Consortium

Date:

2015/11/20

Synonyms:

oviAri4

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000298735.2 (latest)

RefSeq assembly accession:

GCF_000298735.2 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

AMGL02

Assembly method:

SOAPdenovo v. 1.03; PBJelly2 v. 14.9.9

Genome coverage:

166.0x

Sequencing technology:

Illumina GAII; 454; PacBio RSII

IDs: 585171 [UID] 2691088 [GenBank] 2701238 [RefSeq]

See Genome Information for Ovis aries

Pathogen Detection Resources

There are 58 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000298735.2	≠	GCF_000298735.2	Oar_v4.0	Chromosome	Latest GenBank, RefSeq suppressed
GCA_000298735.1	≠	GCF_000298735.1	Oar_v3.1	Chromosome	Replaced GenBank, RefSeq suppressed

Comment

Global statistics

Total sequence length	2,615,499,683
Total ungapped length	2,587,499,057
Gaps between scaffolds	0
Number of scaffolds	5,465
Scaffold N50	100,009,711
Scaffold L50	8
Number of contigs	48,481
Contig N50	150,472
Contig L50	5,008
Total number of chromosomes and plasmids	27
Number of component sequences (WGS or clone)	48,481

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM001582.2	=	NC_019458.2	0
Chromosome 2	CM001583.2	=	NC_019459.2	0
Chromosome 3	CM001584.2	=	NC_019460.2	0
Chromosome 4	CM001585.2	=	NC_019461.2	0
Chromosome 5	CM001586.2	=	NC_019462.2	0
Chromosome 6	CM001587.2	=	NC_019463.2	0
Chromosome 7	CM001588.2	=	NC_019464.2	0
Chromosome 8	CM001589.2	=	NC_019465.2	0
Chromosome 9	CM001590.2	=	NC_019466.2	0
Chromosome 10	CM001591.2	=	NC_019467.2	0
Chromosome 11	CM001592.2	=	NC_019468.2	0
Chromosome 12	CM001593.2	=	NC_019469.2	0
Chromosome 13	CM001594.2	=	NC_019470.2	0
Chromosome 14	CM001595.2	=	NC_019471.2	0
Chromosome 15	CM001596.2	=	NC_019472.2	0
Chromosome 16	CM001597.2	=	NC_019473.2	0
Chromosome 17	CM001598.2	=	NC_019474.2	0
Chromosome 18	CM001599.2	=	NC_019475.2	0
Chromosome 19	CM001600.2	=	NC_019476.2	0
Chromosome 20	CM001601.2	=	NC_019477.2	0
Chromosome 21	CM001602.2	=	NC_019478.2	0
Chromosome 22	CM001603.2	=	NC_019479.2	0
Chromosome 23	CM001604.2	=	NC_019480.2	0
Chromosome 24	CM001605.2	=	NC_019481.2	0
Chromosome 25	CM001606.2	=	NC_019482.2	0
Chromosome 26	CM001607.2	=	NC_019483.2	0
Chromosome X	CM001608.2	=	NC_019484.2	0
unplaced	n/a	n/a	n/a	5,438

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,615,499,683	5,465	2,587,499,057	100,009,711	43,016
Chromosome 1	275,406,953	1	272,921,884	275,406,953	4,112
Chromosome 2	248,966,461	1	246,788,478	248,966,461	3,360
Chromosome 3	223,996,068	1	221,812,035	223,996,068	3,503
Chromosome 4	119,216,639	1	118,162,388	119,216,639	1,689
Chromosome 5	107,836,144	1	107,027,409	107,836,144	1,403
Chromosome 6	116,888,256	1	115,798,419	116,888,256	1,779
Chromosome 7	100,009,711	1	99,248,451	100,009,711	1,207
Chromosome 8	90,615,088	1	89,893,924	90,615,088	1,140
Chromosome 9	94,583,238	1	93,725,104	94,583,238	1,325
Chromosome 10	86,377,204	1	85,560,953	86,377,204	1,251
Chromosome 11	62,170,480	1	61,662,627	62,170,480	816
Chromosome 12	79,028,859	1	78,369,087	79,028,859	1,070
Chromosome 13	82,951,069	1	82,305,619	82,951,069	937
Chromosome 14	62,568,341	1	61,903,304	62,568,341	1,053
Chromosome 15	80,783,214	1	80,025,509	80,783,214	1,110
Chromosome 16	71,693,149	1	71,121,490	71,693,149	931
Chromosome 17	72,251,135	1	71,597,966	72,251,135	1,151
Chromosome 18	68,494,538	1	67,789,201	68,494,538	1,099
Chromosome 19	60,445,663	1	59,986,392	60,445,663	806
Chromosome 20	51,049,468	1	50,540,539	51,049,468	706
Chromosome 21	49,987,992	1	49,384,791	49,987,992	911
Chromosome 22	50,780,147	1	50,334,289	50,780,147	764
Chromosome 23	62,282,865	1	61,804,253	62,282,865	784
Chromosome 24	41,976,827	1	41,567,370	41,976,827	868
Chromosome 25	45,223,504	1	44,762,962	45,223,504	612
Chromosome 26	44,047,080	1	43,725,697	44,047,080	454
Chromosome X	135,185,801	1	132,940,094	135,185,801	2,908
unplaced	30,683,789	5,438	26,738,822	9,375	5,267

Assembly

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Oar_v4.0

See Genome Information for Ovis aries

Pathogen Detection Resources

There are 58 assemblies for this organism

History (Show revision history)

Comment

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