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ASM1206v2

Organism name:: Borrelia hermsii DAH (spirochetes)
Taxonomy check:: OK
Infraspecific name:: Strain: DAH
BioSample:: SAMN02641559
BioProject:: PRJNA29637
Submitter:: Rocky Mountain Laboratories, NIAID, NIH
Date:: 2012/05/10
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000012065.2 (latest)
RefSeq assembly accession:: GCF_000012065.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 502178 [UID] 502108 [GenBank] 502178 [RefSeq]

See Genome Information for Borrelia hermsii

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000012065.2	=	GCF_000012065.2	ASM1206v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_000012065.1	=	GCF_000012065.1	ASM1206v1	Complete Genome	Replaced GenBank, Replaced RefSeq

Comment

genome lacks 5' telomeric end
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000012065.2-RS_2024_04_04
Annotation Date::04/04/2024 01:15:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,034
CDSs (total)::996
Genes (coding)::936
CDSs (with protein)::936
Genes (RNA)::38
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::32
ncRNAs::3
Pseudo Genes (total)::60
CDSs (without protein)::60
Pseudo Genes (ambiguous residues)::0 of 60
Pseudo Genes (frameshifted)::37 of 60
Pseudo Genes (incomplete)::37 of 60
Pseudo Genes (internal stop)::15 of 60
Pseudo Genes (multiple problems)::25 of 60
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,066,225
Total ungapped length	1,066,225
Gaps between scaffolds	0
Number of scaffolds	11
Scaffold N50	922,307
Scaffold L50	1
Number of contigs	11
Contig N50	922,307
Contig L50	1
Total number of chromosomes and plasmids	3
Number of component sequences (WGS or clone)	11

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome	CP000048.1	=	NC_010673.1	0
Plasmid unnamed	n/a	n/a	n/a	9
Plasmid lp53	n/a	n/a	n/a	1

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	1,066,225	11	1,066,225	922,307	0	0
Chromosome	Assembled molecule	922,307	1	922,307	922,307	0	0
Plasmid unnamed	AllAssembled moleculeUnlocalized scaffolds	138,5560138,556	909	138,5560138,556	16,853016,853	000	000
Plasmid lp53	AllAssembled moleculeUnlocalized scaffolds	5,36205,362	101	5,36205,362	5,36205,362	000	000

	ANI	Query coverage	Subject coverage
Declared type	99.99	99.79	71.00
Best-match type	99.99	99.79	71.00

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ASM1206v2

See Genome Information for Borrelia hermsii

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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