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ASM24134v2

Organism name:
Gordonia amarae NBRC 15530 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 15530
BioSample:
SAMD00041822
BioProject:
PRJNA71719
Submitter:
National Institute of Technology and Evaluation
Date:
2011/11/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000241345.2 (latest)
RefSeq assembly accession:
GCF_000241345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BAED01
Assembly method:
Newbler v. 2.3
Genome coverage:
25x
Sequencing technology:
Roche 454

IDs: 329678 [UID] 329658 [GenBank] 329678 [RefSeq]

See Genome Information for Gordonia amarae

There are 5 assemblies for this organism

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History (Show revision history)

Comment


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Global statistics

Total sequence length5,306,375
Total ungapped length5,306,375
Number of contigs83
Contig N50117,263
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)83

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,306,375835,306,375117,26300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gordonia amarae NBRC 15530Gordonia amarae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025273675.1Gordonia pseudamaraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.8853.0554.70

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected