Umaydis521_2.0

Organism name:: Ustilago maydis 521 (smut fungi)
Infraspecific name:: Strain: 521
BioSample:: SAMN02900459
BioProject:: PRJNA1446
Submitter:: Broad Institute
Date:: 2015/02/18
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000328475.2 (latest)
RefSeq assembly accession:: GCF_000328475.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: AACP02
Assembly method:: Arachne v. May-2005
Genome coverage:: 10.0x
Sequencing technology:: Sanger

IDs: 272671 [UID] 1580578 [GenBank] 1636368 [RefSeq]

See Genome Information for Ustilago maydis

Pathogen Detection Resources

There are 38 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000328475.2	=	GCF_000328475.2	Umaydis521_2.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_000328475.1	≠	GCF_000328475.1	ASM32847v1	Contig	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	19,664,356
Total ungapped length	19,641,656
Gaps between scaffolds	0
Number of scaffolds	27
Scaffold N50	884,984
Scaffold L50	7
Number of contigs	254
Contig N50	129,796
Contig L50	47
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	254

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM003140.1	=	NC_026478.1	0
Chromosome 2	CM003141.1	=	NC_026479.1	0
Chromosome 3	CM003142.1	=	NC_026480.1	0
Chromosome 4	CM003143.1	=	NC_026481.1	0
Chromosome 5	CM003144.1	=	NC_026482.1	0
Chromosome 6	CM003145.1	=	NC_026483.1	0
Chromosome 7	CM003146.1	=	NC_026484.1	0
Chromosome 8	CM003147.1	=	NC_026485.1	0
Chromosome 9	CM003148.1	=	NC_026486.1	0
Chromosome 10	CM003149.1	=	NC_026487.1	0
Chromosome 11	CM003150.1	=	NC_026488.1	0
Chromosome 12	CM003151.1	=	NC_026489.1	0
Chromosome 13	CM003152.1	=	NC_026490.1	0
Chromosome 14	CM003153.1	=	NC_026491.1	0
Chromosome 15	CM003154.1	=	NC_026492.1	0
Chromosome 16	CM003155.1	=	NC_026493.1	0
Chromosome 17	CM003156.1	=	NC_026494.1	0
Chromosome 18	CM003157.1	=	NC_026495.1	0
Chromosome 19	CM003158.1	=	NC_026496.1	0
Chromosome 20	CM003159.1	=	NC_026497.1	0
Chromosome 21	CM003160.1	=	NC_026498.1	0
Chromosome 22	CM003161.1	=	NC_026499.1	0
Chromosome 23	CM003162.1	=	NC_026500.1	0
unplaced	n/a	n/a	n/a	4

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	19,664,356	27	19,641,656	884,984	227
Chromosome 1	2,476,501	1	2,473,901	2,476,501	26
Chromosome 2	1,879,391	1	1,877,091	1,879,391	23
Chromosome 3	1,642,070	1	1,640,170	1,642,070	19
Chromosome 4	884,984	1	883,984	884,984	10
Chromosome 5	1,393,419	1	1,392,519	1,393,419	9
Chromosome 6	1,031,380	1	1,030,080	1,031,380	13
Chromosome 7	957,188	1	956,088	957,188	11
Chromosome 8	813,247	1	812,347	813,247	9
Chromosome 9	733,962	1	733,262	733,962	7
Chromosome 10	692,354	1	691,754	692,354	6
Chromosome 11	690,620	1	689,620	690,620	10
Chromosome 12	650,984	1	650,284	650,984	7
Chromosome 13	606,072	1	604,972	606,072	11
Chromosome 14	611,467	1	610,767	611,467	7
Chromosome 15	575,418	1	574,818	575,418	6
Chromosome 16	552,767	1	551,967	552,767	8
Chromosome 17	576,628	1	575,828	576,628	8
Chromosome 18	560,724	1	559,924	560,724	8
Chromosome 19	571,809	1	571,409	571,809	4
Chromosome 20	523,884	1	522,884	523,884	10
Chromosome 21	470,505	1	469,705	470,505	8
Chromosome 22	403,590	1	403,190	403,590	4
Chromosome 23	344,927	1	344,627	344,927	3
unplaced	20,465	4	20,465	5,343	0

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Umaydis521_2.0

See Genome Information for Ustilago maydis

Pathogen Detection Resources

There are 38 assemblies for this organism

History (Show revision history)

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