U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM320786v1

Organism name:
Komagataeibacter sucrofermentans (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LMG 18788
BioSample:
SAMN07311657
BioProject:
PRJNA389382
Submitter:
Faculty of Natural Sciences and Mathematics
Date:
2018/06/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003207865.1 (latest)
RefSeq assembly accession:
GCF_003207865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NKUA01
Assembly method:
SPAdes v. FEBRUARY-2017; SMALT v. FEBRUARY-2017
Expected final version:
yes
Genome coverage:
266.6x
Sequencing technology:
Illumina HiSeq 4000

IDs: 1744331 [UID] 6628278 [GenBank] 6659918 [RefSeq]

See Genome Information for Komagataeibacter sucrofermentans

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from BCCM/LMG bacteria collection.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/05/2017 15:43:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,150
CDS (total)::3,092
Genes (coding)::2,979
CDS (coding)::2,979
Genes (RNA)::58
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::51
ncRNAs::4
Pseudo Genes (total)::113
Pseudo Genes (ambiguous residues)::0 of 113
Pseudo Genes (frameshifted)::44 of 113
Pseudo Genes (incomplete)::77 of 113
Pseudo Genes (internal stop)::24 of 113
Pseudo Genes (multiple problems)::27 of 113
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,363,922
Total ungapped length3,363,922
Number of contigs83
Contig N50145,161
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)83

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,363,922833,363,922145,16100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Komagataeibacter sucrofermentansKomagataeibacter sucrofermentans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025994575.1Komagataeibacter sucrofermentans DSM 15973type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025994575.1Komagataeibacter sucrofermentanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.7499.75
Best-match type99.9999.7499.75

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna