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An organized view of the transcripome



Library:23506 (dbEST ID)

CERES-298

Library Description

Organism:Zea mays
Developmental stage:20 DAP
Tissue:embryo

Source: Alexandrov NN, Ceres, Inc

Gene Content Analysis

22,147 ESTs from this library were grouped into 4,678 UniGene entries (putative genes) [UniGene build #84, 05-Jan-2013]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
871 39328 Zm.8152 Uncharacterized LOC100192746.
819 36980 Zm.100933 Uncharacterized LOC100192755.
644 29078 Zm.2098 Oleosin1.
544 24563 Zm.81332 Oleosin 18 kDa.
468 21132 Zm.66283 TSA: Zea mays cultivar W22 CL356Contig1.betc, mRNA sequence.
460 20770 Zm.19674 15kD beta zein.
397 17926 Zm.19667 Oleosin 18 kDa.
383 17294 Zm.87084 Delta zein structural10.
169 7631 Zm.19682 LOC100276909.
158 7134 Zm.95703 Uncharacterized LOC100384278.
140 6321 Zm.93976 LOC100283729.
138 6231 Zm.84828 EGG APPARATUS-1 protein.
134 6050 Zm.85430 Embryo specific protein1.
132 5960 Zm.23253 Histone H4.
119 5373 Zm.92701 PVR3-like protein.
118 5328 Zm.136988 Delta zein structural18.
103 4651 Zm.67921 Glycine-rich protein1.
103 4651 Zm.66589 LOC100279493.
102 4606 Zm.22773 LOC100286246.
101 4560 Zm.16054 TPD1.
96 4335 Zm.97195 LOC542262.
96 4335 Zm.81067 Uncharacterized LOC100276599.
86 3883 Zm.98904 Hypothetical protein.
83 3748 Zm.86906 LOC100193874.
80 3612 Zm.72831 Uncharacterized LOC100273269.
78 3522 Zm.124614 Oleosin 16 kDa.
72 3251 Zm.93730 Elongation initiation factor5A.
67 3025 Zm.16530 TSA: Zea mays contig49159, mRNA sequence.
67 3025 Zm.1319 Translationally controlled tumor protein-like protein.
63 2845 Zm.94051 Uncharacterized LOC542155.
59 2664 Zm.82266 TSA: Zea mays cultivar W22 CL557Contig1.betc, mRNA sequence.
59 2664 Zm.36063 LOC100281745.
58 2619 Zm.94840 Uncharacterized LOC100384351.
58 2619 Zm.128516 Uncharacterized LOC100501188.
57 2574 Zm.157749 Uncharacterized LOC100533162.
57 2574 Zm.14412 60S ribosomal protein L32.
55 2483 Zm.66709 Uncharacterized LOC100278753.
53 2393 Zm.89638 Phospholipid transfer protein homolog1.
52 2348 Zm.93810 Corn Hageman factor inhibitor.
50 2258 Zm.67270 Uncharacterized LOC100193362.
49 2212 Zm.66598 Flower-specific gamma-thionin.
48 2167 Zm.66965 Uncharacterized LOC100272335.
48 2167 Zm.3896 Globulin2.
48 2167 Zm.16000 19kD alpha zein B3.
47 2122 Zm.7266 Thioredoxin h1 protein.
47 2122 Zm.31572 Uncharacterized LOC100274115.
47 2122 Zm.13209 Cysteine proteinase inhibitor B.
45 2032 Zm.68079 Hypothetical protein.
44 1987 Zm.81281 Uncharacterized LOC100194265.
43 1942 Zm.82386 Elongation factor 1-beta.
42 1896 Zm.9576 Glycine-rich RNA binding protein.
41 1851 Zm.82214 Uncharacterized LOC100192949.
41 1851 Zm.72791 Calmodulin2.
41 1851 Zm.17358 LOC100284927.
40 1806 Zm.70 Full-length cDNA clone ZM_BFb0156G12.
40 1806 Zm.49150 Uncharacterized LOC100194327.
40 1806 Zm.31271 LOC100192550.
40 1806 Zm.29304 Histone H3.2.
39 1761 Zm.80498 60S ribosomal protein L5-1.
37 1671 Zm.34356 P8MTCP1.
36 1626 Zm.92682 40S ribosomal protein S14.
36 1626 Zm.1540 Alcohol dehydrogenase1.
35 1580 Zm.72626 Triosephosphate isomerase, cytosolic.
35 1580 Zm.32162 Uncharacterized LOC100194153.
34 1535 Zm.93711 Uncharacterized LOC100501458.
34 1535 Zm.7127 LOC100280743.
34 1535 Zm.13387 Uncharacterized LOC100274918.
34 1535 Zm.106118 60 ribosomal protein L14.
33 1490 Zm.367 Low temperature-induced protein15.
33 1490 Zm.352 Calmodulin.
33 1490 Zm.19961 60S ribosomal protein L10-3.
32 1445 Zm.16540 Acidic ribosomal protein P2a.
31 1400 Zm.86192 Metallothionein-like protein type 2.
30 1355 Zm.7097 40S ribosomal protein S18.
30 1355 Zm.7082 LOC100194344.
29 1309 Zm.32046 Uncharacterized LOC100191912.
29 1309 Zm.2637 Oleosin Bn-V.
29 1309 Zm.12583 Histone one (H1) 101.
29 1309 Zm.122142 Putative bifunctional inhibitor/LTP/seed storage protein family.
28 1264 Zm.94015 LOC542519.
28 1264 Zm.81930 PME/invertase inhibitor-like protein.
28 1264 Zm.144 Metallothionein2.
27 1219 Zm.96092 Uncharacterized LOC100277121.
27 1219 Zm.68129 LOC100280618.
27 1219 Zm.2438 Eukaryotic translation initiation factor 5A.
26 1174 Zm.84669 Uncharacterized LOC100274138.
26 1174 Zm.74965 Uncharacterized LOC100273118.
26 1174 Zm.19983 60S ribosomal protein L24.
25 1129 Zm.92390 LOC100272307.
25 1129 Zm.80550 Src2-like protein.
25 1129 Zm.78074 LOC100284304.
25 1129 Zm.5973 LOC100276911.
25 1129 Zm.122532 LOC100280744.
24 1084 Zm.94790 40S ribosomal protein S17-4.
24 1084 Zm.85141 Acidic ribosomal protein P2a-2.
24 1084 Zm.33014 LOC100037774.
24 1084 Zm.16488 LOC100281973.
23 1039 Zm.93675 LOC100276789.
23 1039 Zm.91536 Superoxide dismutase9.
23 1039 Zm.8466 LOC100284350.

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Source: NCBI UniGene

EST Sequences

22,986 EST sequences from this library have been submitted to the public sequence database as of 05-Jan-2013.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

References

Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al., Plant Mol Biol 69, 179-194 (2009).



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