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An organized view of the transcripome



Library:12319 (dbEST ID)

3529 - 2 mm ear tissue from Schmidt and Hake labs

Library Description

Organism:Zea mays
Cultivar:B73
Developmental stage:2 mm
Organ:ear
Tissue:ear
Vector:PAD-GAL4-2.1
Vector type:phagemid
Cloning site 1:EcoRI
Cloning site 2:XhoI
Lab host:E. coli XLOLR

RNA isolated by Hake lab. 1 million pfu amplified. Ampicillin is the selection marker.

Source: Walbot V, Stanford University

Gene Content Analysis

18,875 ESTs from this library were grouped into 4,349 UniGene entries (putative genes) [UniGene build #84, 05-Jan-2013]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
497 26331 Zm.93694 High mobility group protein1.
290 15364 Zm.23253 Histone H4.
204 10808 Zm.29304 Histone H3.2.
98 5192 Zm.12584 Histone2A1.
95 5033 Zm.93711 Uncharacterized LOC100501458.
93 4927 Zm.67921 Glycine-rich protein1.
92 4874 Zm.82266 TSA: Zea mays cultivar W22 CL557Contig1.betc, mRNA sequence.
88 4662 Zm.19682 LOC100276909.
69 3656 Zm.8152 Uncharacterized LOC100192746.
67 3550 Zm.81280 Uncharacterized LOC100501984.
66 3497 Zm.70437 Elongation factor alpha8.
65 3444 Zm.49068 Histone2b2.
65 3444 Zm.19813 40S ribosomal protein S27a.
63 3338 Zm.77320 LOC100191612.
57 3020 Zm.6905 Histone H1-like protein.
54 2861 Zm.81799 Uncharacterized LOC100502113.
53 2808 Zm.2157 Ribosomal protein S11.
52 2755 Zm.93669 Uncharacterized LOC100501869.
51 2702 Zm.78372 Chaperone DNA J2.
47 2490 Zm.82214 Uncharacterized LOC100192949.
46 2437 Zm.87243 Uncharacterized LOC100501614.
45 2384 Zm.127 Octopine synthase binding factor1.
43 2278 Zm.82072 Clone 324951 mRNA sequence.
41 2172 Zm.74965 Uncharacterized LOC100273118.
41 2172 Zm.5973 LOC100276911.
39 2066 Zm.79462 LOC100192516.
39 2066 Zm.12583 Histone one (H1) 101.
38 2013 Zm.94175 60S acidic ribosomal protein P0.
38 2013 Zm.89817 LOC100283975.
38 2013 Zm.80498 60S ribosomal protein L5-1.
37 1960 Zm.98904 Hypothetical protein.
37 1960 Zm.66712 LOC100274472.
36 1907 Zm.93730 Elongation initiation factor5A.
36 1907 Zm.93687 LOC100282418.
35 1854 Zm.7142 Ubiquitin-conjugating enzyme E2-17 kDa.
35 1854 Zm.32046 Uncharacterized LOC100191912.
35 1854 Zm.160216 Tonoplast intrinsic protein1.
34 1801 Zm.94122 Uncharacterized LOC100501512.
34 1801 Zm.7082 LOC100194344.
34 1801 Zm.4590 Alpha-tubulin 3.
34 1801 Zm.20027 APx1 - Cytosolic Ascorbate Peroxidase.
33 1748 Zm.91536 Superoxide dismutase9.
33 1748 Zm.84121 Plasminogen activator inhibitor 1 RNA-binding protein.
33 1748 Zm.20180 Histone 2B5.
32 1695 Zm.78021 LOC100274518.
32 1695 Zm.46914 Heat shock protein70-4.
32 1695 Zm.2135 LOC100217069.
31 1642 Zm.7127 LOC100280743.
31 1642 Zm.6625 Hypothetical protein.
31 1642 Zm.10582 Histone one (H1).
30 1589 Zm.92796 TSA: Zea mays contig37210, mRNA sequence.
30 1589 Zm.86906 LOC100193874.
30 1589 Zm.78127 Elongation factor 1-alpha.
30 1589 Zm.1829 Brix domain-containing protein 1.
29 1536 Zm.92701 PVR3-like protein.
29 1536 Zm.84512 Uncharacterized LOC100382822.
29 1536 Zm.31271 LOC100192550.
29 1536 Zm.19917 TSA: Zea mays cultivar W22 CL25Contig1.betc, mRNA sequence.
28 1483 Zm.91681 60S ribosomal protein L35.
28 1483 Zm.81160 Beta-5 tubulin.
28 1483 Zm.78074 LOC100284304.
28 1483 Zm.7006 LOC100282772.
28 1483 Zm.66965 Uncharacterized LOC100272335.
27 1430 Zm.81456 LOC542641.
27 1430 Zm.80965 LOC100285098.
27 1430 Zm.77802 Uncharacterized LOC100278319.
27 1430 Zm.5401 LOC100280588.
26 1377 Zm.80185 LOC100286322.
26 1377 Zm.16740 TSA: Zea mays contig31254, mRNA sequence.
26 1377 Zm.12124 Uncharacterized LOC100274757.
25 1325 Zm.94009 Hypothetical protein.
25 1325 Zm.92368 Uncharacterized LOC100217209.
25 1325 Zm.67704 Ribosomal protein S8.
25 1325 Zm.34516 40S ribosomal subunit protein S21.
25 1325 Zm.158221 Uncharacterized LOC100193258.
24 1272 Zm.93741 IAA17-auxin-responsive Aux/IAA family member.
24 1272 Zm.80691 Elongation factor 1-delta 1.
24 1272 Zm.7097 40S ribosomal protein S18.
24 1272 Zm.13812 60S ribosomal protein L11-1.
23 1219 Zm.95224 LOC100286074.
23 1219 Zm.94182 Calreticulin2.
23 1219 Zm.87110 LOC100282711.
23 1219 Zm.86959 TSA: Zea mays contig26758, mRNA sequence.
23 1219 Zm.67318 Uncharacterized LOC100273379.
23 1219 Zm.14412 60S ribosomal protein L32.
22 1166 Zm.93740 HSP protein.
22 1166 Zm.82143 LOC100282167.
22 1166 Zm.6081 Uncharacterized LOC100276151.
22 1166 Zm.197 Cytochrome P-450 8.
22 1166 Zm.15863 40S ribosomal protein S26.
22 1166 Zm.1319 Translationally controlled tumor protein-like protein.
21 1113 Zm.93837 60S ribosomal protein L27.
21 1113 Zm.82576 Hsc70-interacting protein.
21 1113 Zm.410 Enolase2.
21 1113 Zm.19807 Putative actin family protein isoform 1.
21 1113 Zm.118690 Uncharacterized LOC100273170.
20 1060 Zm.94802 LOC100274530.
20 1060 Zm.94051 Uncharacterized LOC542155.
20 1060 Zm.79880 Vesicle-associated membrane protein 725.
20 1060 Zm.75339 LOC100284257.

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Source: NCBI UniGene

EST Sequences

19,258 EST sequences from this library have been submitted to the public sequence database as of 05-Jan-2013.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)



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