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An organized view of the transcripome



Library:11145 (dbEST ID)

1111 - Unigene III from Maize Genome Project

Library Description

Organism:Zea mays

This library represents the unique genes found in the third round of EST sequencing at Stanford University for the maize genome project. Sequences are present from library 952. Contigs were assembled using ZmDBAssembler and 2 representatives from each contig were selected for the Unigene set. All singlets were also selected.

Source: Walbot V, Stanford University

Gene Content Analysis

2,470 ESTs from this library were grouped into 2,000 UniGene entries (putative genes) [UniGene build #84, 05-Jan-2013]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
10 4049 Zm.25665 Transcribed locus.
7 2834 Zm.19820 LOC100285961.
6 2429 Zm.65400 Uncharacterized LOC100217054.
6 2429 Zm.23253 Histone H4.
5 2024 Zm.12741 LOC100284724.
4 1619 Zm.95095 TSA: Zea mays contig31399, mRNA sequence.
4 1619 Zm.81248 Hypothetical protein.
4 1619 Zm.54118 LOC100272442.
4 1619 Zm.485 Hemoglobin.
3 1215 Zm.9749 Hypothetical protein.
3 1215 Zm.95806 Uncharacterized LOC100279875.
3 1215 Zm.95620 Uncharacterized LOC100502300.
3 1215 Zm.95541 Uncharacterized LOC100383700.
3 1215 Zm.94967 LOC100284266.
3 1215 Zm.94628 LOC100279770.
3 1215 Zm.94238 Eukaryotic initiation factor-5.
3 1215 Zm.94198 LOC100381905.
3 1215 Zm.94036 Uncharacterized LOC100191224.
3 1215 Zm.93710 LOC100282679.
3 1215 Zm.92972 LOC100274177.
3 1215 Zm.922 Uncharacterized LOC100381936.
3 1215 Zm.90354 26S ribosomal RNA gene.
3 1215 Zm.89665 LOC100273311.
3 1215 Zm.89411 Hypothetical protein.
3 1215 Zm.87532 Clone 368885 mRNA sequence.
3 1215 Zm.86965 Secondary cell wall-related glycosyltransferase family 47.
3 1215 Zm.8573 B12D protein.
3 1215 Zm.85254 Uncharacterized LOC100502126.
3 1215 Zm.84716 LOC100285569.
3 1215 Zm.84512 Uncharacterized LOC100382822.
3 1215 Zm.82491 Uncharacterized LOC100382586.
3 1215 Zm.82219 LOC100284092.
3 1215 Zm.8012 LOC100216974.
3 1215 Zm.79729 Uncharacterized LOC100278419.
3 1215 Zm.74126 LOC100286003.
3 1215 Zm.6986 LOC100282095.
3 1215 Zm.6975 LOC100283716.
3 1215 Zm.674 LOC542566.
3 1215 Zm.66987 Safener induced1.
3 1215 Zm.66853 LOC100192654.
3 1215 Zm.3727 Uncharacterized LOC100383446.
3 1215 Zm.35801 Putative cytochrome P450 superfamily protein.
3 1215 Zm.33576 12-oxo-phytodienoic acid reductase1.
3 1215 Zm.25985 Transcribed locus, moderately similar to XP_002441186.1 hypothetical protein SORBIDRAFT_09g021920 [Sorghum bicolor].
3 1215 Zm.25918 LOC100383232.
3 1215 Zm.25738 Respiratory burst oxidase-like protein C.
3 1215 Zm.24874 Transcribed locus, moderately similar to XP_003581593.1 PREDICTED: craniofacial development protein 2-like [Brachypodium distachyon].
3 1215 Zm.24561 LOC100279874.
3 1215 Zm.24416 Uncharacterized LOC100278856.
3 1215 Zm.21325 Metal ion binding protein.
3 1215 Zm.2119 TSA: Zea mays contig19167, mRNA sequence.
3 1215 Zm.20069 Acetyl-CoA acetyltransferase, cytosolic 1.
3 1215 Zm.19917 TSA: Zea mays cultivar W22 CL25Contig1.betc, mRNA sequence.
3 1215 Zm.19600 ATP binding protein.
3 1215 Zm.17411 Uncharacterized LOC100216981.
3 1215 Zm.12621 Sarcosine oxidase.
3 1215 Zm.118718 Zea agamous4.
3 1215 Zm.118382 TUB transcription factor.
3 1215 Zm.117916 Hypothetical protein.
3 1215 Zm.10238 Uncharacterized LOC100274322.
2 810 Zm.9981 Uncharacterized LOC100193084.
2 810 Zm.9963 Stromal 70 kDa heat shock-related protein.
2 810 Zm.99476 LOC100284233.
2 810 Zm.98319 LOC100284604.
2 810 Zm.97973 Uncharacterized LOC100381900.
2 810 Zm.97823 Uncharacterized LOC100279767.
2 810 Zm.97808 Uncharacterized LOC100216753.
2 810 Zm.97476 Transcribed locus, moderately similar to NP_001132898.1 uncharacterized protein LOC100194395 [Zea mays].
2 810 Zm.97469 Uncharacterized LOC100279584.
2 810 Zm.97357 Uncharacterized LOC100382245.
2 810 Zm.97 LOC100282671.
2 810 Zm.968 GTP-binding protein PTD004.
2 810 Zm.96728 LOC542229.
2 810 Zm.96639 ATP binding protein.
2 810 Zm.9645 LOC542109.
2 810 Zm.96331 LOC100273293.
2 810 Zm.96246 Uncharacterized LOC100279280.
2 810 Zm.95858 Pyruvate dehydrogenase1.
2 810 Zm.95855 Transcribed locus, strongly similar to XP_002448532.1 hypothetical protein SORBIDRAFT_06g028570 [Sorghum bicolor].
2 810 Zm.95608 LOC100384185.
2 810 Zm.95510 PIF-like orf1.
2 810 Zm.95276 LON2 protein.
2 810 Zm.95229 TSA: Zea mays contig08375, mRNA sequence.
2 810 Zm.95198 Uncharacterized LOC100382815.
2 810 Zm.94803 LOC100272721.
2 810 Zm.94742 LOC100274487.
2 810 Zm.94726 LOC100382519.
2 810 Zm.94638 Uncharacterized LOC100272531.
2 810 Zm.94429 LOC100284700.
2 810 Zm.94170 Ribosomal protein S18.
2 810 Zm.94058 TSA: Zea mays contig06959, mRNA sequence.
2 810 Zm.94053 Nicotiana lesion-inducing like.
2 810 Zm.93831 LOC100191320.
2 810 Zm.93812 LOC100281571.
2 810 Zm.93808 40S ribosomal protein S16.
2 810 Zm.93749 LOC100276509.
2 810 Zm.93747 LOC542284.
2 810 Zm.93694 High mobility group protein1.
2 810 Zm.93681 Hypothetical protein.
2 810 Zm.90769 Hypothetical protein.

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Source: NCBI UniGene

EST Sequences

2,562 EST sequences from this library have been submitted to the public sequence database as of 05-Jan-2013.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • unknown developmental stage

Source: NCBI Clone Registry



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