Skip Nav

An organized view of the transcripome



Library:15679 (dbEST ID)

Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library

Library Description

Organism:Xenopus laevis
Developmental stage:late gastrula (stage 12.5)
Tissue:anterior neuroectoderm

Source: Masanori Taira, Graduate School of Science, University of Tokyo; CREST, Japan Science and Technology Corporation, Japan

Gene Content Analysis

65,246 ESTs from this library were grouped into 8,372 UniGene entries (putative genes) [UniGene build #94, 16-Feb-2013]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
1542 23634 Xl.47001 Coiled-coil domain containing 50.
780 11955 Xl.4515 Cold inducible RNA binding protein.
722 11066 Xl.23 Elongation factor 1 alpha, oocyte form.
712 10913 Xl.8151 Cold inducible RNA binding protein.
582 8920 Xl.76252 Sec61 gamma subunit.
552 8460 Xl.17432 Eukaryotic translation elongation factor 1 alpha 1.
466 7142 Xl.53287 Transcribed locus, strongly similar to NP_059333.1 cytochrome c oxidase subunit I [Danio rerio].
425 6514 Xl.23295 Protein arginine methyltransferase 1.
388 5947 Xl.53620 Transcribed locus, strongly similar to NP_008137.1 cytochrome c oxidase subunit II [Xenopus laevis].
382 5855 Xl.4150 HMG-X protein.
371 5686 Xl.4618 Serine/arginine-rich splicing factor 2.
365 5594 Xl.42475 Transcribed locus, strongly similar to NP_008140.1 cytochrome c oxidase subunit III [Xenopus laevis].
341 5226 Xl.4964 Ribosomal protein S27a.
336 5150 Xl.8947 High mobility group box 3.
302 4629 Xl.54798 High mobility group nucleosome binding domain 1.
272 4169 Xl.42570 H2A histone family, member Z.
268 4108 Xl.7875 Solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5.
268 4108 Xl.2633 Y box binding protein 1.
252 3862 Xl.76224 Transcribed locus, strongly similar to NP_001080330.1 B box-binding protein [Xenopus laevis].
244 3740 Xl.2141 Heterogeneous nuclear ribonucleoprotein D-like.
242 3709 Xl.71394 Uncharacterized LOC100127279.
242 3709 Xl.43505 High mobility group HMG-17.
240 3678 Xl.76010 High mobility group nucleosomal binding domain 2.
237 3632 Xl.4111 Heat shock 70kDa protein 1-like.
227 3479 Xl.29799 Protein arginine methyltransferase 1.
219 3357 Xl.23196 High mobility group nucleosome binding domain 1.
216 3311 Xl.56405 High mobility group box 3.
214 3280 Xl.57181 Small nuclear ribonucleoprotein 27kDa (U4/U6.U5).
213 3265 Xl.47937 Ribonucleoprotein A1a.
211 3234 Xl.42618 High mobility group box 2.
208 3188 Xl.83316 Transcribed locus, strongly similar to NP_001079576.1 HMG-X protein [Xenopus laevis].
203 3111 Xl.76233 Transcribed locus, strongly similar to NP_006588.1 HSPA8 gene product [Homo sapiens].
202 3096 Xl.56594 Ubiquitin C.
201 3081 Xl.86817 Histone H3.3.
194 2973 Xl.50438 Acidic (leucine-rich) nuclear phosphoprotein 32 family, member C.
188 2881 Xl.20985 Cathepsin L2.
187 2866 Xl.3664 Heterogeneous nuclear ribonucleoprotein A2/B1.
184 2820 Xl.47270 Glutamate-ammonia ligase.
181 2774 Xl.40721 Heterogeneous nuclear ribonucleoprotein D-like.
178 2728 Xl.34803 CDNA clone IMAGE:6874753.
177 2713 Xl.3360 Interleukin enhancer binding factor 2.
171 2621 Xl.83244 Glutamate-ammonia ligase.
166 2544 Xl.21978 Vg1 mRNA binding protein 40.
165 2529 Xl.45404 Heterogeneous nuclear ribonucleoprotein A/B.
162 2483 Xl.7820 Heterogeneous nuclear ribonucleoprotein A1.
155 2376 Xl.16531 MGC78845 protein.
154 2360 Xl.8860 Tumor protein, translationally-controlled 1.
153 2345 Xl.5909 Nuclear RNA helicase.
150 2299 Xl.25540 KH domain containing, RNA binding, signal transduction associated 1.
148 2268 Xl.8131 Heterogeneous nuclear ribonucleoprotein K.
143 2192 Xl.5499 Transcribed locus, strongly similar to NP_001034554.1 serine/arginine-rich splicing factor 5 [Homo sapiens].
141 2161 Xl.76302 Transcribed locus, weakly similar to XP_002938941.1 PREDICTED: hypothetical protein LOC100488209 [Xenopus (Silurana) tropicalis].
140 2146 Xl.12026 Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase.
137 2100 Xl.4043 H3 histone, family 3B (H3.3B).
132 2023 Xl.3189 Eukaryotic translation initiation factor 3, subunit A.
123 1885 Xl.20793 Fused in sarcoma.
122 1870 Xl.4231 Heterogeneous nuclear ribonucleoprotein A0.
121 1855 Xl.55167 Eukaryotic translation initiation factor 1B.
119 1824 Xl.36404 Histone cluster 2, H3d.
115 1763 Xl.1642 Keratin 5, gene 7.
114 1747 Xl.648 DEAD (Asp-Glu-Ala-Asp) box helicase 5.
113 1732 Xl.59600 Rexp44 mRNA, complete sequence.
109 1671 Xl.53505 Immunoresponsive gene 1.
109 1671 Xl.4305 Nucleophosmin (nucleolar phosphoprotein B23, numatrin).
108 1655 Xl.29304 Ribosomal protein S20.
105 1609 Xl.6133 Keratin.
103 1579 Xl.5269 Ferritin mitochondrial.
101 1548 Xl.5366 Small nuclear ribonucleoprotein 70kDa (U1).
98 1502 Xl.29353 Heat shock protein 90kDa alpha (cytosolic), class B member 1.
97 1487 Xl.66058 Tubulin, alpha 3e.
96 1471 Xl.53793 Acidic (leucine-rich) nuclear phosphoprotein 32 family, member B.
96 1471 Xl.47855 Nucleolin.
96 1471 Xl.15910 Nuclear casein kinase and cyclin-dependent kinase substrate 1.
95 1456 Xl.1573 Serine/arginine-rich splicing factor 3.
94 1441 Xl.21410 Dyskeratosis congenita 1, dyskerin.
92 1410 Xl.23211 Small nuclear ribonucleoparticle-associated protein (snRNP) mRNA, clone Sm51.
91 1395 Xl.8877 Prothymosin, alpha.
91 1395 Xl.55882 Small nuclear ribonucleoprotein polypeptides B and B1.
89 1364 Xl.8124 Uncharacterized protein MGC115642.
89 1364 Xl.4223 Ornithine decarboxylase 1.
89 1364 Xl.22 SRY (sex determining region Y)-box 3.
87 1333 Xl.8951 Heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A).
87 1333 Xl.35547 Poly(A) binding protein, cytoplasmic 1.
87 1333 Xl.19822 Eukaryotic translation elongation factor 2, gene 1.
85 1303 Xl.8842 Ribosomal protein L3.
85 1303 Xl.744 Probable ATP-dependent RNA helicase DDX5-like.
83 1272 Xl.7828 Transcribed locus, moderately similar to XP_002942027.1 PREDICTED: hypothetical protein LOC100486548 [Xenopus (Silurana) tropicalis].
82 1257 Xl.70716 RNA-binding protein 8A-B.
82 1257 Xl.3783 Nucleolar protein NO38.
81 1241 Xl.3788 NOP56 ribonucleoprotein.
80 1226 Xl.4517 Hyaluronan synthase 1.
79 1211 Xl.1150 Sox-D protein.
78 1195 Xl.6036 Ribosomal protein S2.
78 1195 Xl.25949 Ribosomal protein L6.
77 1180 Xl.34269 Synaptotagmin binding, cytoplasmic RNA interacting protein.
76 1165 Xl.8139 Fibrillarin.
75 1149 Xl.4554 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A.
74 1134 Xl.3647 Interleukin enhancer binding factor 3, 90kDa.
74 1134 Xl.25221 RNA binding motif protein, X-linked.
73 1119 Xl.6295 NHP2 non-histone chromosome protein 2-like 1.

1 2 3 4 5 6 7 8 9 Next> Last>>

Source: NCBI UniGene

EST Sequences

69,915 EST sequences from this library have been submitted to the public sequence database as of 16-Feb-2013.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • ectoderm
  • gastrula
  • bulk

Source: NCBI Clone Registry



National Center for Biotechnology Information
U.S. National Library of Medicine
8600 Rockville Pike, Bethesda, MD 20894