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An organized view of the transcripome



Library:20041 (dbEST ID)

Inflorescence with GA3 (VvS12)

Library Description

Organism:Vitis vinifera
Cultivar:Thompson-seedless
Organ:Inflorescence
Vector:pDONR
Cloning site 1:BsrG I
Cloning site 2:BsrG I
Lab host:DH10B

Source: Pena-Cortes H, Universidad Tecnica Federico Santa Maria

Gene Content Analysis

3,964 ESTs from this library were grouped into 2,227 UniGene entries (putative genes) [UniGene build #15, 27-Apr-2013]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
30 7568 Vvi.8009 Metallothionein.
29 7316 Vvi.6039 Transcribed locus, strongly similar to XP_002271116.1 PREDICTED: non-specific lipid-transfer protein [Vitis vinifera].
27 6811 Vvi.6785 Clone SS0AFA15YD19.
24 6054 Vvi.1750 Elongation factor 1-alpha-like.
20 5045 Vvi.7621 Non-specific lipid-transfer protein P5-like.
20 5045 Vvi.4117 1-aminocyclopropane-1-carboxylic acid oxidase 1.
18 4541 Vvi.3756 Chloroplast ELIP early light-induced protein.
18 4541 Vvi.117 Chalcone synthase.
16 4036 Vvi.26482 Aquaporin-like.
15 3784 Vvi.236 Ribulose bisphosphate carboxylase small chain, chloroplastic-like.
14 3532 Vvi.1973 Chalcone synthase.
13 3280 Vvi.7917 Translationally-controlled tumor protein homolog-like.
13 3280 Vvi.7400 Aquaporin-like.
13 3280 Vvi.4834 Aquaporin-like.
12 3027 Vvi.9151 Aquaporin PIP2;2.
12 3027 Vvi.4044 Ascorbate peroxidase.
11 2775 Vvi.757 Defensin-like protein.
11 2775 Vvi.7552 Peptidyl-prolyl cis-trans isomerase-like.
11 2775 Vvi.7454 60S ribosomal protein L10-like.
11 2775 Vvi.5236 Probable histone H2B.1-like.
11 2775 Vvi.4630 Chlorophyll a-b binding protein 40, chloroplastic-like.
11 2775 Vvi.3505 Sucrose synthase-like.
11 2775 Vvi.1991 Aquaporin PIP1;2.
10 2523 Vvi.8142 Auxin-induced protein 22A-like.
10 2523 Vvi.7811 Chlorophyll a-b binding protein 40, chloroplastic-like.
10 2523 Vvi.4548 Glyceraldehyde-3-phosphate dehydrogenase.
9 2270 Vvi.9268 GDP-mannose-3',5'-epimerase.
9 2270 Vvi.8929 Snakin-1-like.
9 2270 Vvi.7841 Inositol-3-phosphate synthase-like.
9 2270 Vvi.3834 Uncharacterized LOC100243286.
9 2270 Vvi.2663 Ferredoxin-1, chloroplastic-like.
9 2270 Vvi.1834 Glucan endo-1,3-beta-glucosidase-like protein 3.
9 2270 Vvi.12696 40S ribosomal protein S26-2-like.
8 2018 Vvi.9405 Histone H3.3.
8 2018 Vvi.7970 High mobility group B2 protein-like.
8 2018 Vvi.6629 S-adenosyl-L-methionine decarboxylase.
8 2018 Vvi.5312 Metalloendoproteinase 1-like.
8 2018 Vvi.2800 Chalcone--flavonone isomerase-like.
8 2018 Vvi.128 Flavanone 3-hydroxylase.
8 2018 Vvi.127 Leucoanthocyanidin dioxygenase.
8 2018 Vvi.11359 Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like.
7 1766 Vvi.9325 60S acidic ribosomal protein P2B-like.
7 1766 Vvi.9086 Heat shock 70kDa protein 1/8-like.
7 1766 Vvi.8171 Class IV endochitinase.
7 1766 Vvi.8094 High mobility group-like.
7 1766 Vvi.7958 GDP-L-galactose phosphorylase 1-like.
7 1766 Vvi.7394 Heat shock cognate protein 80-like.
7 1766 Vvi.7235 Cyc07.
7 1766 Vvi.39 Phosphoglycerate kinase, cytosolic-like.
7 1766 Vvi.1564 Calreticulin-like.
7 1766 Vvi.108 Polyphenol oxidase.
6 1514 Vvi.9364 Callose synthase 7-like.
6 1514 Vvi.9152 Fructose-bisphosphate aldolase cytoplasmic isozyme-like.
6 1514 Vvi.8898 Thiol protease aleurain-like.
6 1514 Vvi.864 60S ribosomal protein L35a-1-like.
6 1514 Vvi.8056 DnaJ protein-like.
6 1514 Vvi.8029 Calmodulin-related protein-like.
6 1514 Vvi.7884 60S ribosomal protein L27-3-like.
6 1514 Vvi.7740 Pollen-specific protein C13-like.
6 1514 Vvi.7489 Glucan endo-1,3-beta-glucosidase 3-like.
6 1514 Vvi.722 60S ribosomal protein L6-like.
6 1514 Vvi.7153 40S ribosomal protein S2-4-like.
6 1514 Vvi.560 Thiazole biosynthetic enzyme, chloroplastic-like.
6 1514 Vvi.523 Probable xyloglucan endotransglucosylase/hydrolase protein 27-like.
6 1514 Vvi.4693 Metallothionein-like protein type 2-like.
6 1514 Vvi.3255 Acyl-CoA-binding protein-like.
6 1514 Vvi.3015 Protein FRIGIDA-like.
6 1514 Vvi.291 Polyadenylate-binding protein 2-like.
6 1514 Vvi.2885 Uncharacterized LOC100853713.
6 1514 Vvi.24411 Chalcone synthase.
6 1514 Vvi.1996 Superoxide dismutase [Cu-Zn]-like.
6 1514 Vvi.12062 ADP-ribosylation factor 2-like.
5 1261 Vvi.9078 Guanine nucleotide-binding protein subunit beta-like protein.
5 1261 Vvi.9015 60S ribosomal protein L37-1-like.
5 1261 Vvi.822 Ubiquitin-conjugating enzyme E2 variant 1D-like.
5 1261 Vvi.8055 Thioredoxin h.
5 1261 Vvi.8006 40S ribosomal protein S11-like.
5 1261 Vvi.7853 Photosystem I reaction center subunit VI, chloroplastic-like.
5 1261 Vvi.7825 Probable fructose-bisphosphate aldolase 1, chloroplastic-like.
5 1261 Vvi.7580 Oxygen-evolving enhancer protein 3-2, chloroplastic-like.
5 1261 Vvi.7545 Thiazole biosynthetic enzyme, chloroplastic-like.
5 1261 Vvi.7521 40S ribosomal protein S9-2-like.
5 1261 Vvi.7518 60S ribosomal protein L19-like.
5 1261 Vvi.7460 40S ribosomal protein S17-like.
5 1261 Vvi.7188 Histone deacetylase HDT1-like.
5 1261 Vvi.6997 Photosystem I reaction center subunit II, chloroplastic-like.
5 1261 Vvi.6967 Photosystem I reaction center subunit XI, chloroplastic-like.
5 1261 Vvi.6796 2-Cys peroxiredoxin.
5 1261 Vvi.6710 Uncharacterized LOC100247613.
5 1261 Vvi.5656 Glucan endo-1,3-beta-glucosidase 7-like.
5 1261 Vvi.4746 Eukaryotic translation initiation factor 5A-2-like.
5 1261 Vvi.4301 Cyclin-dependent kinases regulatory subunit 2-like.
5 1261 Vvi.2514 14 kDa proline-rich protein DC2.15-like.
5 1261 Vvi.24373 Elongation factor 1-alpha-like.
5 1261 Vvi.24359 Elongation factor 1-alpha-like.
5 1261 Vvi.1444 14-3-3 protein.
5 1261 Vvi.13573 Aspartic proteinase nepenthesin-1-like.
5 1261 Vvi.1255 Probable histone H2B.1-like.
5 1261 Vvi.1182 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic-like.
5 1261 Vvi.10196 Basic leucine zipper and W2 domain-containing protein 2-like.

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Source: NCBI UniGene

EST Sequences

4,023 EST sequences from this library have been submitted to the public sequence database as of 27-Apr-2013.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • inflorescence
  • flowering
  • Thompson-seedless

Source: NCBI Clone Registry



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