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An organized view of the transcripome



Library:26224 (dbEST ID)

WZOAQRAQ

Library Description

Organism:Quercus robur
Developmental stage:pedonculate oaks
Tissue:swelling buds

Source: Frigerio J, INRA - UMR BIOGECO

Gene Content Analysis

6,044 ESTs from this library were grouped into 2,351 UniGene entries (putative genes) [UniGene build #1, 10-Sep-2010]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
507 83885 Qro.55 Transcribed locus, strongly similar to XP_325850.1 hypothetical protein ( (X74405) polyubiquitin [Artemia franciscana] ) [Neurospora crassa OR74A].
89 14725 Qro.498 Transcribed locus, strongly similar to NP_174286.1 CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding [Arabidopsis thaliana].
47 7776 Qro.28 Transcribed locus, strongly similar to NP_724345.1 histone H3 [Drosophila melanogaster].
43 7114 Qro.6 Transcribed locus, strongly similar to NP_568655.2 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2); antiporter/ triose-phosphate transmembrane transporter [Arabidopsis thaliana].
41 6784 Qro.71 Transcribed locus, strongly similar to NP_200847.1 elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana].
37 6122 Qro.17 Transcribed locus, strongly similar to NP_178585.1 LHCB2.1; chlorophyll binding [Arabidopsis thaliana].
32 5295 Qro.104 Transcribed locus, moderately similar to NP_001061878.1 Os08g0434300 [Oryza sativa Japonica Group].
30 4964 Qro.387 Transcribed locus, moderately similar to NP_001002486.1 60S ribosomal protein L38 [Danio rerio].
29 4798 Qro.16107 Transcribed locus.
25 4136 Qro.502 Transcribed locus.
25 4136 Qro.127 Transcribed locus, strongly similar to XP_001697239.1 hypothetical protein CHLREDRAFT_150548 [Chlamydomonas reinhardtii].
22 3640 Qro.34 Transcribed locus, strongly similar to XP_002284583.1 PREDICTED: hypothetical protein [Vitis vinifera].
22 3640 Qro.2585 Transcribed locus, strongly similar to NP_524352.1 histone H4 replacement, isoform C [Drosophila melanogaster].
21 3475 Qro.923 Transcribed locus, strongly similar to XP_002666952.1 PREDICTED: histone cluster 2, H3c2-like [Danio rerio].
21 3475 Qro.1452 Transcribed locus, moderately similar to XP_002272299.1 PREDICTED: similar to F2D10.18 [Vitis vinifera].
19 3144 Qro.280 Transcribed locus, strongly similar to NP_177206.1 ARFA1D; GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana].
19 3144 Qro.1973 Transcribed locus, strongly similar to NP_724345.1 histone H3 [Drosophila melanogaster].
19 3144 Qro.1429 Transcribed locus, strongly similar to XP_002275297.1 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera].
19 3144 Qro.1040 Transcribed locus, moderately similar to NP_001045130.2 Os01g0905800 [Oryza sativa Japonica Group].
18 2978 Qro.1198 Transcribed locus, strongly similar to NP_175778.1 RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase [Arabidopsis thaliana].
17 2813 Qro.48 Transcribed locus, strongly similar to NP_193129.1 SHM4 (serine hydroxymethyltransferase 4); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding [Arabidopsis thaliana].
17 2813 Qro.4701 Transcribed locus, strongly similar to NP_524352.1 histone H4 replacement, isoform C [Drosophila melanogaster].
17 2813 Qro.37 Transcribed locus, strongly similar to NP_565414.1 40S ribosomal protein S4 (RPS4A) [Arabidopsis thaliana].
17 2813 Qro.270 Transcribed locus, moderately similar to XP_002266685.1 PREDICTED: hypothetical protein [Vitis vinifera].
17 2813 Qro.249 Transcribed locus, strongly similar to XP_002263522.1 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera].
16 2647 Qro.636 Transcribed locus, moderately similar to NP_190470.1 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome [Arabidopsis thaliana].
15 2482 Qro.67 Transcribed locus, moderately similar to XP_002308463.1 predicted protein [Populus trichocarpa].
15 2482 Qro.2059 Transcribed locus, strongly similar to NP_171777.1 emb2386 (embryo defective 2386); structural constituent of ribosome [Arabidopsis thaliana].
15 2482 Qro.1528 Transcribed locus, strongly similar to NP_195870.1 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding [Arabidopsis thaliana].
14 2316 Qro.2815 Transcribed locus, strongly similar to NP_001045607.1 Os02g0103700 [Oryza sativa Japonica Group].
14 2316 Qro.222 Transcribed locus, strongly similar to XP_002265940.1 PREDICTED: hypothetical protein [Vitis vinifera].
14 2316 Qro.151 Transcribed locus, strongly similar to XP_002326063.1 predicted protein [Populus trichocarpa].
14 2316 Qro.136 Transcribed locus, moderately similar to NP_177217.1 structural constituent of ribosome [Arabidopsis thaliana].
13 2151 Qro.821 Transcribed locus, strongly similar to NP_195235.1 CAT2 (CATALASE 2); catalase [Arabidopsis thaliana].
13 2151 Qro.435 Transcribed locus, moderately similar to NP_001054392.1 Os05g0103200 [Oryza sativa Japonica Group].
13 2151 Qro.238 Transcribed locus, moderately similar to XP_001702514.1 ribosomal protein L37, component of cytosolic 80S ribosome and 60S large subunit [Chlamydomonas reinhardtii].
13 2151 Qro.1859 Transcribed locus, strongly similar to NP_179277.1 PIP2;8 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;8); water channel [Arabidopsis thaliana].
13 2151 Qro.14 Transcribed locus, strongly similar to NP_193405.1 60S ribosomal protein L15 (RPL15A) [Arabidopsis thaliana].
13 2151 Qro.1336 Transcribed locus, strongly similar to NP_001078345.1 SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2); methionine adenosyltransferase [Arabidopsis thaliana].
12 1985 Qro.914 Transcribed locus, strongly similar to NP_171936.1 malate dehydrogenase, cytosolic, putative [Arabidopsis thaliana].
12 1985 Qro.5294 Transcribed locus, strongly similar to NP_195336.1 60S ribosomal protein L8 (RPL8C) [Arabidopsis thaliana].
12 1985 Qro.496 Transcribed locus, strongly similar to XP_002307234.1 hypothetical protein POPTRDRAFT_716206 [Populus trichocarpa].
12 1985 Qro.376 Transcribed locus, strongly similar to NP_001067845.2 Os11g0455500 [Oryza sativa Japonica Group].
12 1985 Qro.2621 Transcribed locus, strongly similar to XP_002298912.1 predicted protein [Populus trichocarpa].
12 1985 Qro.2325 Transcribed locus, moderately similar to NP_173289.1 60S ribosomal protein L6 (RPL6A) [Arabidopsis thaliana].
12 1985 Qro.15968 Transcribed locus, weakly similar to XP_001841947.1 N-acetyl neuraminate lyase [Culex quinquefasciatus].
12 1985 Qro.1561 Transcribed locus, strongly similar to XP_001756319.1 predicted protein [Physcomitrella patens subsp. patens].
12 1985 Qro.1205 Transcribed locus, strongly similar to NP_187864.1 HSP70 (heat shock protein 70); ATP binding [Arabidopsis thaliana].
12 1985 Qro.1145 Transcribed locus, strongly similar to NP_181192.1 LOS2; copper ion binding / phosphopyruvate hydratase [Arabidopsis thaliana].
11 1820 Qro.718 Transcribed locus, strongly similar to NP_194898.1 RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome [Arabidopsis thaliana].
11 1820 Qro.3793 Transcribed locus, strongly similar to NP_173692.1 PFL (POINTED FIRST LEAVES); RNA binding / nucleic acid binding / structural constituent of ribosome [Arabidopsis thaliana].
11 1820 Qro.336 Transcribed locus, moderately similar to NP_194439.1 60S ribosomal protein L14 (RPL14B) [Arabidopsis thaliana].
11 1820 Qro.332 Transcribed locus, weakly similar to XP_002315512.1 predicted protein [Populus trichocarpa].
11 1820 Qro.3029 Transcribed locus, strongly similar to NP_200414.1 HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding [Arabidopsis thaliana].
11 1820 Qro.221 Transcribed locus, strongly similar to NP_174486.1 PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding [Arabidopsis thaliana].
11 1820 Qro.1462 Transcribed locus, strongly similar to XP_002268645.1 PREDICTED: hypothetical protein [Vitis vinifera].
10 1655 Qro.896 Transcribed locus, strongly similar to NP_194568.1 AAC3 (ADP/ATP CARRIER 3); ATP:ADP antiporter/ binding [Arabidopsis thaliana].
10 1655 Qro.719 Transcribed locus, strongly similar to XP_002316287.1 predicted protein [Populus trichocarpa].
10 1655 Qro.513 Transcribed locus, strongly similar to NP_194414.1 SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tag [Arabidopsis thaliana].
10 1655 Qro.2654 Transcribed locus, strongly similar to NP_180895.1 60S ribosomal protein L23 (RPL23B) [Arabidopsis thaliana].
10 1655 Qro.253 Transcribed locus, moderately similar to XP_002329311.1 predicted protein [Populus trichocarpa].
10 1655 Qro.2406 Transcribed locus, strongly similar to XP_002315310.1 predicted protein [Populus trichocarpa].
10 1655 Qro.229 Transcribed locus, moderately similar to NP_190462.1 EMB1080 (embryo defective 1080); structural constituent of ribosome [Arabidopsis thaliana].
10 1655 Qro.2054 Transcribed locus, weakly similar to XP_002323962.1 predicted protein [Populus trichocarpa].
10 1655 Qro.2017 Transcribed locus, moderately similar to NP_199641.1 ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1); glucose-1-phosphate adenylyltransferase [Arabidopsis thaliana].
10 1655 Qro.157 Transcribed locus, strongly similar to XP_002283421.1 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera].
10 1655 Qro.1257 Transcribed locus, strongly similar to NP_566796.2 GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding [Arabidopsis thaliana].
10 1655 Qro.11829 Transcribed locus, moderately similar to XP_002325686.1 predicted protein [Populus trichocarpa].
10 1655 Qro.1045 Transcribed locus, strongly similar to NP_568437.1 TUB8; structural constituent of cytoskeleton [Arabidopsis thaliana].
9 1489 Qro.901 Transcribed locus, moderately similar to XP_002273297.1 PREDICTED: hypothetical protein [Vitis vinifera].
9 1489 Qro.864 Transcribed locus, strongly similar to XP_001767214.1 predicted protein [Physcomitrella patens subsp. patens].
9 1489 Qro.50 Transcribed locus, strongly similar to XP_001694608.1 bi-ubiquitin [Chlamydomonas reinhardtii].
9 1489 Qro.443 Transcribed locus, strongly similar to NP_182283.1 60S ribosomal protein L7A (RPL7aA) [Arabidopsis thaliana].
9 1489 Qro.399 Transcribed locus, moderately similar to XP_002303762.1 predicted protein [Populus trichocarpa].
9 1489 Qro.315 Transcribed locus, strongly similar to NP_189967.1 CAM7 (CALMODULIN 7); calcium ion binding [Arabidopsis thaliana].
9 1489 Qro.3030 Transcribed locus, moderately similar to XP_002316489.1 predicted protein [Populus trichocarpa].
9 1489 Qro.2663 Transcribed locus, moderately similar to NP_566865.2 SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana].
9 1489 Qro.2176 Transcribed locus, weakly similar to NP_001062201.1 Os08g0509200 [Oryza sativa Japonica Group].
9 1489 Qro.2023 Transcribed locus, moderately similar to XP_002307539.1 predicted protein [Populus trichocarpa].
9 1489 Qro.1960 Transcribed locus, strongly similar to XP_002313617.1 predicted protein [Populus trichocarpa].
9 1489 Qro.1872 Transcribed locus, moderately similar to NP_193236.1 60S ribosomal protein L27 (RPL27C) [Arabidopsis thaliana].
9 1489 Qro.183 Transcribed locus, strongly similar to XP_002266125.1 PREDICTED: hypothetical protein [Vitis vinifera].
9 1489 Qro.173 Transcribed locus, moderately similar to NP_567346.1 NDPK1; ATP binding / nucleoside diphosphate kinase [Arabidopsis thaliana].
9 1489 Qro.16371 Transcribed locus, weakly similar to NP_001063538.2 Os09g0490400 [Oryza sativa Japonica Group].
9 1489 Qro.16245 Transcribed locus.
9 1489 Qro.1617 Transcribed locus, strongly similar to NP_001078781.1 40S ribosomal protein S20 (RPS20C) [Arabidopsis thaliana].
9 1489 Qro.146 Transcribed locus, strongly similar to NP_198236.1 GME (GDP-D-MANNOSE 3',5'-EPIMERASE); GDP-mannose 3,5-epimerase/ NAD or NADH binding / catalytic [Arabidopsis thaliana].
9 1489 Qro.11313 Transcribed locus, strongly similar to XP_002324052.1 predicted protein [Populus trichocarpa].
9 1489 Qro.1129 Transcribed locus, strongly similar to NP_191429.1 60S ribosomal protein L11 (RPL11B) [Arabidopsis thaliana].
9 1489 Qro.1009 Transcribed locus, strongly similar to XP_002966682.1 hypothetical protein SELMODRAFT_36118 [Selaginella moellendorffii].
9 1489 Qro.10023 Transcribed locus, strongly similar to XP_002318020.1 predicted protein [Populus trichocarpa].
8 1324 Qro.940 Transcribed locus, strongly similar to XP_002313320.1 predicted protein [Populus trichocarpa].
8 1324 Qro.890 Transcribed locus, strongly similar to XP_002282974.1 PREDICTED: similar to protein synthesis initiation factor-like [Vitis vinifera].
8 1324 Qro.757 Transcribed locus, strongly similar to XP_001690993.1 ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit [Chlamydomonas reinhardtii].
8 1324 Qro.504 Transcribed locus, strongly similar to XP_002300225.1 predicted protein [Populus trichocarpa].
8 1324 Qro.494 Transcribed locus, strongly similar to NP_180995.1 60S ribosomal protein L18A (RPL18aB) [Arabidopsis thaliana].
8 1324 Qro.4753 Transcribed locus, weakly similar to XP_002321170.1 predicted protein [Populus trichocarpa].
8 1324 Qro.47 Transcribed locus, strongly similar to NP_001078737.1 60S ribosomal protein L13A (RPL13aD) [Arabidopsis thaliana].
8 1324 Qro.38 Transcribed locus, strongly similar to NP_001173260.1 Os03g0141000 [Oryza sativa Japonica Group].
8 1324 Qro.2622 Transcribed locus, moderately similar to NP_006752.1 14-3-3 protein epsilon [Homo sapiens].

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Source: NCBI UniGene

EST Sequences

8,525 EST sequences from this library have been submitted to the public sequence database as of 10-Sep-2010.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)



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