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An organized view of the transcripome



Library:19051 (dbEST ID)

Oryza sativa (japonica cultivar-group) shoot and callus

Library Description

Organism:Oryza sativa Japonica Group
Cultivar:Nipponbare
Tissue:shoot and callus

Source: Shoshi Kikuchi, National Institute of Agrobiological Sciences

Gene Content Analysis

6,547 ESTs from this library were grouped into 2,956 UniGene entries (putative genes) [UniGene build #86, 05-Jun-2012]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
146 22300 Os.12244 Os03g0266300.
61 9317 Os.8926 Os03g0245800.
53 8095 Os.4653 Os01g0124200.
53 8095 Os.102949 Os09g0482610.
52 7943 Os.61620 Os02g0758000.
48 7332 Os.12767 Os07g0529600.
43 6568 Os.10908 Os08g0473900.
33 5040 Os.12593 Os08g0473600.
30 4582 Os.12629 CDNA clone:OSIGCSN052H04, full insert sequence.
29 4430 Os.28139 Os01g0839900.
29 4430 Os.20927 Os12g0292400.
28 4277 Os.7926 Os11g0482000.
28 4277 Os.22440 Os12g0274700.
26 3971 Os.8827 Os01g0822900.
26 3971 Os.5567 Os03g0178000.
26 3971 Os.22730 Os03g0267200.
25 3819 Os.28438 Os01g0501800.
25 3819 Os.2416 Os01g0940700.
25 3819 Os.22571 Os01g0256500.
24 3666 Os.74829 Os05g0171900.
23 3513 Os.7941 Os09g0346500.
23 3513 Os.37834 Os04g0679400.
23 3513 Os.26695 Os03g0815100.
23 3513 Os.24165 Os05g0169100.
23 3513 Os.22750 Os02g0121300.
22 3360 Os.80713 Os01g0136000.
22 3360 Os.22731 Os03g0266900.
22 3360 Os.12366 Os03g0146100.
21 3208 Os.80468 Os08g0482700.
20 3055 Os.17108 Os12g0569500.
19 2902 Os.8316 Os07g0622100.
17 2597 Os.75633 Os11g0167800.
17 2597 Os.7151 Os04g0253000.
17 2597 Os.38378 Os01g0102900.
16 2444 Os.37909 Os05g0344200.
14 2138 Os.80534 Os08g0560900.
14 2138 Os.6345 Os06g0561000.
14 2138 Os.31191 Os07g0448800.
14 2138 Os.22723 Os04g0667800.
14 2138 Os.11582 Os03g0598800.
13 1986 Os.8859 Os07g0176400.
13 1986 Os.6754 Os11g0149200.
13 1986 Os.5908 Os01g0668100.
13 1986 Os.22660 Os06g0681400.
13 1986 Os.12627 Os07g0141400.
13 1986 Os.12238 Os02g0105900.
13 1986 Os.10134 Os11g0220800.
12 1833 Os.69236 Os01g0184100.
12 1833 Os.58620 Os03g0424500.
12 1833 Os.57555 Os07g0577600.
12 1833 Os.13793 Os03g0670700.
11 1680 Os.87672 Os11g0703900.
11 1680 Os.7756 Os10g0508700.
11 1680 Os.7228 Os02g0756200.
11 1680 Os.61590 Os03g0778100.
11 1680 Os.12362 Os03g0576700.
11 1680 Os.12332 Os03g0158500.
11 1680 Os.12296 Os03g0592500.
10 1527 Os.57458 Os02g0469600.
10 1527 Os.4244 Os08g0498100.
10 1527 Os.28462 Os12g0114500.
10 1527 Os.22599 Os05g0247100.
10 1527 Os.15917 Os04g0497000.
10 1527 Os.12889 Os03g0183300.
10 1527 Os.12788 Os01g0210600.
10 1527 Os.12624 Os07g0558400.
10 1527 Os.11541 Os04g0349500.
10 1527 Os.11346 Os02g0301100.
10 1527 Os.10933 Os01g0705200.
9 1375 Os.76019 Os03g0237500.
9 1375 Os.60596 Os09g0507800.
9 1375 Os.58066 Os08g0500700.
9 1375 Os.57483 Os03g0337800.
9 1375 Os.57443 Os09g0551600.
9 1375 Os.51758 Os07g0675250.
9 1375 Os.4882 Os10g0207500.
9 1375 Os.4880 Os08g0234000.
9 1375 Os.459 Os03g0663500.
9 1375 Os.3380 Os08g0460000.
9 1375 Os.20151 Os03g0194900.
9 1375 Os.12832 Os06g0728000.
9 1375 Os.11323 Os03g0316200.
9 1375 Os.10931 Os05g0489600.
8 1222 Os.99786 Os06g0320500.
8 1222 Os.9941 Os09g0258600.
8 1222 Os.96709 Os06g0594400.
8 1222 Os.8943 Os11g0620100.
8 1222 Os.8491 Os12g0420400.
8 1222 Os.74667 Os05g0151300.
8 1222 Os.74656 Os03g0786100.
8 1222 Os.6788 Os06g0643300.
8 1222 Os.60407 Os08g0200300.
8 1222 Os.52817 Os06g0580100.
8 1222 Os.4775 Os01g0136200.
8 1222 Os.4762 Os10g0530900.
8 1222 Os.4698 Os01g0933900.
8 1222 Os.4223 Os06g0168700.
8 1222 Os.39583 Os10g0536400.
8 1222 Os.37773 Os03g0267000.
8 1222 Os.28203 Os04g0459500.

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Source: NCBI UniGene

EST Sequences

6,719 EST sequences from this library have been submitted to the public sequence database as of 05-Jun-2012.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • unknown developmental stage
  • japonica cultivar-group

Source: NCBI Clone Registry



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