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An organized view of the transcripome



Library:19039 (dbEST ID)

Oryza sativa (japonica cultivar-group) BAP treated callus

Library Description

Organism:Oryza sativa Japonica Group
Cultivar:Nipponbare
Tissue:BAP treated callus

Source: Shoshi Kikuchi, National Institute of Agrobiological Sciences

Gene Content Analysis

8,473 ESTs from this library were grouped into 3,199 UniGene entries (putative genes) [UniGene build #86, 05-Jun-2012]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
641 75652 Os.10908 Os08g0473900.
182 21480 Os.102949 Os09g0482610.
125 14753 Os.12593 Os08g0473600.
106 12510 Os.87672 Os11g0703900.
74 8734 Os.74844 Os06g0701100.
52 6137 Os.22660 Os06g0681400.
45 5311 Os.26566 Os02g0169300.
42 4957 Os.5567 Os03g0178000.
38 4485 Os.87686 Os03g0648400.
37 4367 Os.6728 Os03g0350300.
34 4013 Os.56263 Os06g0681400.
33 3895 Os.58066 Os08g0500700.
32 3777 Os.37834 Os04g0679400.
30 3541 Os.4663 Os01g0131600.
29 3423 Os.57462 Os10g0167300.
29 3423 Os.21601 Os11g0210300.
28 3305 Os.12191 Os01g0840100.
26 3069 Os.74829 Os05g0171900.
26 3069 Os.4764 Os03g0181500.
26 3069 Os.10937 Os03g0192700.
25 2951 Os.6345 Os06g0561000.
25 2951 Os.57458 Os02g0469600.
23 2715 Os.49249 Os02g0765600.
23 2715 Os.11346 Os02g0301100.
21 2478 Os.8032 Os04g0670200.
20 2360 Os.15738 Os12g0637100.
19 2242 Os.8859 Os07g0176400.
18 2124 Os.6288 Os08g0412700.
18 2124 Os.60530 Os07g0246200.
18 2124 Os.4881 Os07g0606900.
17 2006 Os.8311 Os06g0719600.
17 2006 Os.10118 Os09g0553200.
16 1888 Os.8733 Os02g0817700.
16 1888 Os.5072 Os03g0703000.
16 1888 Os.37576 Os03g0815900.
15 1770 Os.87660 Os09g0457500.
15 1770 Os.16010 Os05g0500900.
15 1770 Os.12642 Os08g0540400.
14 1652 Os.8827 Os01g0822900.
14 1652 Os.6792 Os10g0537800.
13 1534 Os.99881 Os05g0475400.
13 1534 Os.20016 Os09g0132600.
13 1534 Os.19241 Os03g0231600.
13 1534 Os.100587 Os07g0559700.
12 1416 Os.57552 Os02g0782700.
12 1416 Os.5507 Os12g0167900.
12 1416 Os.49195 Os03g0221500.
12 1416 Os.4882 Os10g0207500.
12 1416 Os.2674 Os04g0379900.
12 1416 Os.21801 Os01g0138800.
11 1298 Os.8049 Os01g0926300.
11 1298 Os.55700 Os04g0656100.
11 1298 Os.4776 Os05g0349500.
11 1298 Os.4378 Os01g0550300.
11 1298 Os.28397 Os02g0626400.
11 1298 Os.25578 Os07g0538000.
11 1298 Os.12610 Os01g0654500.
11 1298 Os.12385 Os03g0787300.
11 1298 Os.11624 Os05g0302700.
11 1298 Os.11094 Os04g0546800.
11 1298 Os.10130 Os05g0135700.
10 1180 Os.8947 Os03g0154000.
10 1180 Os.80802 Os07g0688700.
10 1180 Os.7113 Os05g0149600.
10 1180 Os.57474 Os04g0677500.
10 1180 Os.5562 Os04g0600200.
10 1180 Os.52150 Os04g0543900.
10 1180 Os.5039 Os03g0599800.
10 1180 Os.48216 Os09g0518200.
10 1180 Os.4767 Os01g0652600.
10 1180 Os.35020 Os11g0126900.
10 1180 Os.1981 Os01g0118000.
10 1180 Os.13464 Os07g0636000.
10 1180 Os.12332 Os03g0158500.
10 1180 Os.12241 Os03g0244200.
10 1180 Os.10551 Os10g0462900.
9 1062 Os.37916 Os01g0698000.
9 1062 Os.15904 Os01g0776600.
9 1062 Os.145 Os02g0803700.
9 1062 Os.12722 Os06g0571400.
9 1062 Os.12692 Os03g0726100.
9 1062 Os.11341 Os10g0101200.
9 1062 Os.11284 Os08g0109200.
9 1062 Os.11029 Os03g0276500.
9 1062 Os.10871 Os08g0314800.
9 1062 Os.10135 Os01g0681600.
9 1062 Os.100157 Os05g0375400.
8 944 Os.9186 Os02g0601100.
8 944 Os.7909 Os02g0735200.
8 944 Os.74845 Os05g0111300.
8 944 Os.6093 Os02g0200900.
8 944 Os.59298 Os03g0655700.
8 944 Os.53614 Os02g0755900.
8 944 Os.48721 Os10g0561400.
8 944 Os.4683 Os05g0469600.
8 944 Os.26472 Os04g0482300.
8 944 Os.2404 Os10g0555600.
8 944 Os.22975 Os11g0148500.
8 944 Os.18449 Os04g0539500.
8 944 Os.18299 Os07g0169600.

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Source: NCBI UniGene

EST Sequences

8,947 EST sequences from this library have been submitted to the public sequence database as of 05-Jun-2012.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • callus
  • unknown developmental stage
  • japonica cultivar-group

Source: NCBI Clone Registry



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