Skip Nav

An organized view of the transcripome



Library:14232 (dbEST ID)

Rice root plasmid cDNA library (14ROOT)

Library Description

Organism:Oryza sativa Japonica Group
Cultivar:Nackdong
Developmental stage:14 days after germination
Tissue:root
Vector:pCR4-TOPO
Vector type:Plasmid
Cloning site 1:EcoRI
Lab host:E.coli DH10B

mRNA was capped with oligoribonucleotides and then used as templates for RT-PCR.

Source: Nahm B.H., Genomics and Genetics Institute, GreenGene Biotech Inc.; Division of Bioscience and Bioinformatics, MyongJi University

Gene Content Analysis

975 ESTs from this library were grouped into 273 UniGene entries (putative genes) [UniGene build #86, 05-Jun-2012]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
83 85128 Os.75633 Os11g0167800.
36 36923 Os.9941 Os09g0258600.
34 34872 Os.102958 Os06g0246000.
26 26667 Os.38378 Os01g0102900.
20 20513 Os.24165 Os05g0169100.
13 13333 Os.28209 Os01g0328400.
13 13333 Os.22750 Os02g0121300.
13 13333 Os.20927 Os12g0292400.
12 12308 Os.11077 Os06g0130900.
12 12308 Os.10152 Os06g0152100.
11 11282 Os.57450 Os12g0507200.
11 11282 Os.19803 Os01g0153100.
11 11282 Os.10784 Os02g0465900.
10 10256 Os.79045 Os11g0602600.
10 10256 Os.6 Os11g0660500.
10 10256 Os.12094 Os02g0543000.
10 10256 Os.10931 Os05g0489600.
9 9231 Os.28420 Os02g0310200.
9 9231 Os.1316 Os01g0803200.
8 8205 Os.74845 Os05g0111300.
8 8205 Os.6828 Os03g0806900.
8 8205 Os.58620 Os03g0424500.
8 8205 Os.57454 Os03g0818400.
8 8205 Os.39222 Os11g0428800.
8 8205 Os.25946 Os06g0134000.
8 8205 Os.2226 Os07g0687200.
8 8205 Os.17560 Os07g0553700.
7 7179 Os.46272 Os04g0515300.
7 7179 Os.2715 Os10g0563700.
7 7179 Os.11962 Os09g0467200.
7 7179 Os.11255 Os04g0556300.
6 6154 Os.99804 Os06g0643100.
6 6154 Os.88094 Os05g0556900.
6 6154 Os.8549 Os03g0709000.
6 6154 Os.7926 Os11g0482000.
6 6154 Os.6788 Os06g0643300.
6 6154 Os.5096 Os02g0121800.
6 6154 Os.37953 Os11g0671000.
6 6154 Os.12274 Os07g0159800.
6 6154 Os.12163 Os03g0226200.
5 5128 Os.9876 Os10g0411700.
5 5128 Os.7890 Os08g0435900.
5 5128 Os.60407 Os08g0200300.
5 5128 Os.58136 Os07g0181800.
5 5128 Os.4759 Os09g0367700.
5 5128 Os.15641 Os01g0965900.
5 5128 Os.12785 Os10g0564300.
5 5128 Os.12723 Os03g0285700.
5 5128 Os.12590 Os06g0115500.
5 5128 Os.11961 Os05g0454500.
5 5128 Os.1120 Os06g0274000.
5 5128 Os.10171 Os03g0103100.
5 5128 Os.10134 Os11g0220800.
4 4103 Os.9323 Os03g0695600.
4 4103 Os.9197 Os04g0413600.
4 4103 Os.7852 Os07g0647500.
4 4103 Os.6669 Os07g0599900.
4 4103 Os.57594 Os01g0152900.
4 4103 Os.5512 Os11g0169900.
4 4103 Os.4711 Os06g0342200.
4 4103 Os.36176 Os03g0734000.
4 4103 Os.34904 Os01g0918300.
4 4103 Os.2681 Os03g0390400.
4 4103 Os.26671 Os11g0488600.
4 4103 Os.2618 Os01g0675100.
4 4103 Os.16418 Os07g0662500.
4 4103 Os.15262 Os01g0962600.
4 4103 Os.12973 Os06g0514800.
4 4103 Os.12832 Os06g0728000.
4 4103 Os.12296 Os03g0592500.
3 3077 Os.9019 Os10g0536000.
3 3077 Os.87721 Os12g0576100.
3 3077 Os.7794 Os10g0528400.
3 3077 Os.74165 Os04g0564600.
3 3077 Os.59126 Os08g0112800.
3 3077 Os.57468 Os03g0345200.
3 3077 Os.28384 Os06g0612800.
3 3077 Os.22723 Os04g0667800.
3 3077 Os.11507 Os01g0348700.
3 3077 Os.11378 Os02g0175800.
3 3077 Os.11314 Os01g0600000.
3 3077 Os.11043 Os09g0413500.
3 3077 Os.10818 Os01g0102700.
2 2051 Os.9669 Os05g0432700.
2 2051 Os.9548 Os01g0174900.
2 2051 Os.9391 Os08g0374200.
2 2051 Os.9371 Os05g0557000.
2 2051 Os.93246 Os05g0410900.
2 2051 Os.9189 Os08g0490900.
2 2051 Os.91426 Transcribed locus, moderately similar to NP_198801.1 40S ribosomal protein S9-2 [Arabidopsis thaliana].
2 2051 Os.9083 Os04g0432600.
2 2051 Os.89140 Japonica Group cDNA clone:J033123G15, full insert sequence.
2 2051 Os.88111 Os07g0545400.
2 2051 Os.87792 Os11g0521500.
2 2051 Os.8682 Os10g0169200.
2 2051 Os.8524 Os05g0595400.
2 2051 Os.8428 Os05g0368300.
2 2051 Os.80719 Os01g0149400.
2 2051 Os.80579 Os08g0117200.
2 2051 Os.7929 Os02g0216300.

1 2 3 Next> Last>>

Source: NCBI UniGene

EST Sequences

1,415 EST sequences from this library have been submitted to the public sequence database as of 05-Jun-2012.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

  • root
  • seedling
  • japonica cultivar-group

Source: NCBI Clone Registry



National Center for Biotechnology Information
U.S. National Library of Medicine
8600 Rockville Pike, Bethesda, MD 20894