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An organized view of the transcripome



Library:24917 (dbEST ID)

Tilapia adult stomach library

Library Description

Organism:Oreochromis niloticus
Developmental stage:adult
Tissue:stomach

normalized

Source: Thomas D. Kocher, University of Maryland

Gene Content Analysis

3,232 ESTs from this library were grouped into 2,160 UniGene entries (putative genes) [UniGene build #2, 28-Feb-2011]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs TPM   UniGene Entry
9 2785 Oni.715 Transcribed locus.
9 2785 Oni.4184 Transcribed locus.
8 2475 Oni.43915 Transcribed locus.
8 2475 Oni.3902 Transcribed locus, weakly similar to XP_692427.1 PREDICTED: glutathione S-transferase theta 1a [Danio rerio].
7 2166 Oni.9072 Transcribed locus, moderately similar to NP_001002621.1 hypothetical protein LOC436894 [Danio rerio].
7 2166 Oni.5768 Transcribed locus, moderately similar to NP_001007621.1 pyruvate dehydrogenase E1 component subunit beta, mitochondrial precursor [Rattus norvegicus].
7 2166 Oni.3832 Transcribed locus, strongly similar to NP_001013363.1 RNA-binding protein 8A [Danio rerio].
7 2166 Oni.1342 Transcribed locus, strongly similar to NP_058977.1 proteasome subunit alpha type-4 [Rattus norvegicus].
7 2166 Oni.1139 Transcribed locus.
6 1856 Oni.939 UDP-glucuronosyltransferase 1 (UGT).
6 1856 Oni.539 Transcribed locus, strongly similar to NP_990672.1 myosin regulatory light chain 2, smooth muscle minor isoform [Gallus gallus].
6 1856 Oni.4222 Transcribed locus, moderately similar to NP_001018512.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Danio rerio].
6 1856 Oni.41067 Transcribed locus.
6 1856 Oni.382 Transcribed locus, strongly similar to NP_001019574.1 cytochrome c oxidase subunit Vaa [Danio rerio].
6 1856 Oni.3171 Transcribed locus, strongly similar to NP_001019600.1 mitochondrial ATP synthase beta subunit-like [Danio rerio].
6 1856 Oni.2035 Transcribed locus.
6 1856 Oni.1044 Transcribed locus.
5 1547 Oni.9525 Transcribed locus.
5 1547 Oni.8285 Transcribed locus, strongly similar to NP_571467.2 proteasome subunit beta type-8 [Danio rerio].
5 1547 Oni.5478 Transcribed locus, strongly similar to NP_001025358.1 proteasome subunit alpha type-3 [Danio rerio].
5 1547 Oni.41072 Transcribed locus.
5 1547 Oni.40913 Transcribed locus.
5 1547 Oni.3090 Transcribed locus, strongly similar to NP_001004283.1 eukaryotic translation initiation factor 3 subunit D [Rattus norvegicus].
5 1547 Oni.2125 Transcribed locus, moderately similar to NP_775331.1 epididymal secretory protein E1 precursor [Danio rerio].
5 1547 Oni.20361 Transcribed locus, weakly similar to XP_002664516.1 PREDICTED: retinoic acid receptor responder (tazarotene induced) 3-like isoform 1 [Danio rerio].
5 1547 Oni.1858 Glutathione peroxidase.
5 1547 Oni.17485 Transcribed locus.
5 1547 Oni.1404 Transcribed locus, moderately similar to NP_001006038.1 hypothetical protein LOC450017 [Danio rerio].
5 1547 Oni.11521 Transcribed locus, moderately similar to XP_685621.4 PREDICTED: wu:fc76g05 isoform 1 [Danio rerio].
4 1238 Oni.99 Transcribed locus.
4 1238 Oni.8685 Transcribed locus, moderately similar to NP_001134117.1 PDZ and LIM domain protein 3 [Salmo salar].
4 1238 Oni.8652 Transcribed locus, moderately similar to NP_956996.1 ATP synthase subunit d, mitochondrial [Danio rerio].
4 1238 Oni.8218 Transcribed locus, strongly similar to NP_032973.1 26S protease regulatory subunit 4 [Mus musculus].
4 1238 Oni.8182 Transcribed locus, moderately similar to XP_001340407.1 PREDICTED: thiosulfate sulfurtransferase KAT-like [Danio rerio].
4 1238 Oni.7913 Transcribed locus, strongly similar to NP_001002131.1 26S proteasome non-ATPase regulatory subunit 8 [Danio rerio].
4 1238 Oni.7517 Transcribed locus.
4 1238 Oni.7146 Transcribed locus, strongly similar to NP_956314.1 protein BTG1 [Danio rerio].
4 1238 Oni.7049 Transcribed locus, moderately similar to NP_001026388.1 growth hormone-inducible transmembrane protein [Gallus gallus].
4 1238 Oni.7030 Transcribed locus, moderately similar to NP_001025285.1 28S ribosomal protein S18a, mitochondrial [Danio rerio].
4 1238 Oni.6974 Transcribed locus, strongly similar to NP_001006428.1 charged multivesicular body protein 1b [Gallus gallus].
4 1238 Oni.6787 Transcribed locus, weakly similar to NP_001135170.1 S100 calcium binding protein V2-like [Salmo salar].
4 1238 Oni.6578 Transcribed locus.
4 1238 Oni.6219 Transcribed locus, strongly similar to NP_998331.1 proteasome subunit alpha type-7-like [Danio rerio].
4 1238 Oni.6077 Transcribed locus, moderately similar to NP_006338.1 peptidyl-prolyl cis-trans isomerase H [Homo sapiens].
4 1238 Oni.548 Transcribed locus, moderately similar to NP_997841.1 glutathione S-transferase M [Danio rerio].
4 1238 Oni.5395 Transcribed locus, moderately similar to NP_001038338.1 protein QIL1 [Danio rerio].
4 1238 Oni.535 Transcribed locus, strongly similar to NP_001002068.1 cytochrome c [Danio rerio].
4 1238 Oni.5330 Transcribed locus, strongly similar to XP_486217.2 PREDICTED: NHP2-like protein 1-like [Mus musculus].
4 1238 Oni.502 Transcribed locus, weakly similar to NP_001154031.1 Glutathione S-transferase A [Oncorhynchus mykiss].
4 1238 Oni.4958 Transcribed locus.
4 1238 Oni.46 Transcribed locus, strongly similar to NP_058856.1 40S ribosomal protein S6 [Rattus norvegicus].
4 1238 Oni.44580 Transcribed locus, moderately similar to NP_001018600.1 hypothetical protein LOC553802 [Danio rerio].
4 1238 Oni.4448 Transcribed locus, moderately similar to NP_001035133.1 Leydig cell tumor 10 kDa protein [Danio rerio].
4 1238 Oni.4436 Transcribed locus, moderately similar to XP_002666556.1 PREDICTED: hypothetical protein LOC335550 isoform 1 [Danio rerio].
4 1238 Oni.44230 Transcribed locus.
4 1238 Oni.44225 Transcribed locus, strongly similar to NP_956060.1 alpha-soluble NSF attachment protein [Danio rerio].
4 1238 Oni.44174 Transcribed locus, strongly similar to NP_001002155.1 ribosomal protein L21 [Danio rerio].
4 1238 Oni.44078 Transcribed locus.
4 1238 Oni.43941 Transcribed locus, moderately similar to NP_001092200.1 prothymosin alpha-B [Danio rerio].
4 1238 Oni.43910 Transcribed locus, weakly similar to NP_998559.1 glutathione S-transferase, alpha-like [Danio rerio].
4 1238 Oni.43875 Transcribed locus, moderately similar to NP_956800.1 hypothetical protein LOC393478 [Danio rerio].
4 1238 Oni.43870 Transcribed locus, moderately similar to NP_001154031.1 Glutathione S-transferase A [Oncorhynchus mykiss].
4 1238 Oni.41498 Transcribed locus.
4 1238 Oni.41462 Transcribed locus.
4 1238 Oni.41448 Transcribed locus.
4 1238 Oni.41447 Transcribed locus.
4 1238 Oni.40689 Transcribed locus, weakly similar to NP_001117668.1 rhamnose binding lectin STL2 [Oncorhynchus mykiss].
4 1238 Oni.3918 Transcribed locus.
4 1238 Oni.39 Transcribed locus, strongly similar to NP_001116390.1 collagen type I alpha 1 [Oryzias latipes].
4 1238 Oni.3812 Transcribed locus, strongly similar to NP_077779.2 calcineurin subunit B type 1 [Mus musculus].
4 1238 Oni.3711 Transcribed locus, moderately similar to NP_114021.2 nucleoside diphosphate kinase B [Rattus norvegicus].
4 1238 Oni.3679 Transcribed locus, strongly similar to NP_957048.1 heat shock factor binding protein 1 [Danio rerio].
4 1238 Oni.3416 Transcribed locus, weakly similar to NP_001027900.1 cytochrome c oxidase, subunit VIIa 2 [Danio rerio].
4 1238 Oni.3214 Transcribed locus, weakly similar to XP_002196146.1 PREDICTED: hypothetical protein [Taeniopygia guttata].
4 1238 Oni.32024 Transcribed locus.
4 1238 Oni.32022 Transcribed locus, moderately similar to NP_001156635.1 cytochrome P450 2P3 [Oryzias latipes].
4 1238 Oni.3001 Transcribed locus, moderately similar to NP_775370.1 elongation factor 1-gamma [Danio rerio].
4 1238 Oni.2958 Transcribed locus, strongly similar to NP_001020709.1 tetraspanin 3 [Danio rerio].
4 1238 Oni.29063 Transcribed locus, weakly similar to NP_001003875.1 U1 small nuclear ribonucleoprotein 70 kDa [Danio rerio].
4 1238 Oni.2858 Transcribed locus, moderately similar to NP_001004682.1 fatty acid binding protein 11a [Danio rerio].
4 1238 Oni.2758 Transcribed locus, strongly similar to NP_957293.1 eukaryotic translation initiation factor 3 subunit G [Danio rerio].
4 1238 Oni.2568 Transcribed locus.
4 1238 Oni.2327 Transcribed locus, strongly similar to NP_055580.1 mitochondrial import receptor subunit TOM20 homolog [Homo sapiens].
4 1238 Oni.2256 Transcribed locus, moderately similar to NP_001186938.1 eukaryotic translation initiation factor 3, subunit F-like [Danio rerio].
4 1238 Oni.22055 Transcribed locus, moderately similar to XP_693825.2 PREDICTED: hypothetical protein [Danio rerio].
4 1238 Oni.21799 Transcribed locus, weakly similar to XP_002661011.1 PREDICTED: C-C motif chemokine 21-like [Danio rerio].
4 1238 Oni.21753 Transcribed locus.
4 1238 Oni.21554 Transcribed locus.
4 1238 Oni.19499 Transcribed locus, moderately similar to XP_693745.1 PREDICTED: putative transmembrane protein TA-2-like [Danio rerio].
4 1238 Oni.18201 Transcribed locus, weakly similar to NP_989907.1 acyl-CoA-binding protein [Gallus gallus].
4 1238 Oni.17721 Transcribed locus, weakly similar to NP_001138713.1 rapunzel2 [Danio rerio].
4 1238 Oni.1702 Nascent polypeptide-associated complex alpha polypeptide (naca).
4 1238 Oni.17 Transcribed locus, strongly similar to NP_001007480.1 60S ribosomal protein L4 [Gallus gallus].
4 1238 Oni.15452 Transcribed locus.
4 1238 Oni.1412 Transcribed locus, moderately similar to XP_002663033.1 PREDICTED: anterior gradient 2 homolog [Danio rerio].
4 1238 Oni.13452 Transcribed locus.
4 1238 Oni.11083 Transcribed locus, moderately similar to NP_919348.3 fructose-bisphosphate aldolase B [Danio rerio].
4 1238 Oni.1102 Transcribed locus.
3 928 Oni.9918 Transcribed locus, moderately similar to NP_001133346.1 Small VCP/p97-interacting protein [Salmo salar].
3 928 Oni.9774 Transcribed locus.

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Source: NCBI UniGene

EST Sequences

4,498 EST sequences from this library have been submitted to the public sequence database as of 28-Feb-2011.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)



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